Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00200 ATGGCCAATGAAACGGTTCACGACATCATTTTCCGGTCGAAATTGCCGGATATTTACATCCCTAAGCACCTACCTCTGCACTCGTACTGCCTTCAAGAAAAGATGGCAGAGATCGGCCACCGGACCTGTCTAATCAATGCCGTCACTGGTGAATCCTTCACTTATTCCGACGTCGACCTCGCCGCTCGCAAGGCCGCCTCCGGATTGTACAAACTCGGTATTGCAAAAGGCGATGTGATCATGCTCCTCCTCCCGAACTCACCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCGTACCTTGGCGCGATTATGACGGCGGCGAATCCTTTCTTCACTGCGGCAGAGATCGCAAAGCAAGCGAAAGGATCGAAGGCGAAATTGACAATCACGCAATCGTCGTATTACGAGAAAGTGAAGGAAATAACAGAGCAATTACCTGATGCTAAAATCATGACCGTCGATTCTCCGCCGCTAGGTTGCTTATCGTTCGCCGATTTAATCCAGGGAGGCGATCATGAGATTCCGGCGGTGGAGATCAGTCCCGACGACGTTGTTGCTCTGCCGTACTCCTCTGGAACCACCGGATTGCCGAAAGGAGTGATGCTAACACATAAAGGATTAGTGACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTACTACAGAAACGACGATGTGATTTTGTGCGTTTTGCCGCTTTTTCATATCTATTCGCTTAATTCGGTTCTGCTCTGCGGGTTGCGCGCCGGTGCGACGATTTTGATCATGCCTAAATTTGAGATTGGTTCGCTTTTGCAATTGGTGGAGAAATACAGAGTTTCAATTGCGCCGATTGTGCCGCCGATTGTTCTCGCCATTGCGAAGTCGCCGGACTTGGAGAAATACGATTTGTCGTCGATCAGAATGATTAAATCTGGAGGAGCTCCGCTCGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCCAAGGCTGTGCTCGGCCAGGGATATGGAATGACAGAGGCGGGACCTGTACTAACGATGGGTTTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCAGGAGCCTGCGGTACCGTCGTGAGAAATGCCGAGATAAAGATCGTCGATACCGAAAACGGCGGCTCGTTGCCCCGAAACACGCCGGGAGAGATCTGCATCAAAGGCGATCAAATCATGAAAGGCTATCTCAACAATCCGGAGGCAACGGCTGCCACAATCGACAACGAAGGCTGGTTGCACACCGGCGATATCGGCTTGATCGACGACGATGACGAACTCTTCATCGTCGATCGGTTGAAGGAACTGATTAAGTACAAGGGATTCCAAGTTGCGCCGGCGGAACTCGAAGCTCTATTGCTCACTCATCCGGTCATCTCCGATGCCGCCGTCGTTCCAATGAAAGATGAACAAGCTGGAGAAGTTCCAGTTGCGTTCGTAGTGAAATTGAAGAACTCCAAAGTCACAGAGGATGAAATTAAACAATTTATATCAAAACAGGCATGTGGTTTTCTACAAGAGAATAAACCGGGTTTTTTTCATAGGCGCAATTCCGAAATCGCCCTCCGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAGCTGA 1623 50.03 MANETVHDIIFRSKLPDIYIPKHLPLHSYCLQEKMAEIGHRTCLINAVTGESFTYSDVDLAARKAASGLYKLGIAKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKAKLTITQSSYYEKVKEITEQLPDAKIMTVDSPPLGCLSFADLIQGGDHEIPAVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYRNDDVILCVLPLFHIYSLNSVLLCGLRAGATILIMPKFEIGSLLQLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRMIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEIKIVDTENGGSLPRNTPGEICIKGDQIMKGYLNNPEATAATIDNEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSKVTEDEIKQFISKQACGFLQENKPGFFHRRNSEIALRQDLEEGVEGKVGS 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 910054 912899 + CmaCh01G002000.1 Cma01g00200 285893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00200 540 Pfam AMP-binding enzyme C-terminal domain 452 505 IPR025110 -
Cma01g00200 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 506 - -
Cma01g00200 540 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cma01g00200 540 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 6 506 - -
Cma01g00200 540 Gene3D - 438 538 IPR045851 -
Cma01g00200 540 Pfam AMP-binding enzyme 34 443 IPR000873 -
Cma01g00200 540 SUPERFAMILY Acetyl-CoA synthetase-like 15 504 - -
Cma01g00200 540 CDD 4CL 20 504 - -
Cma01g00200 540 Gene3D - 4 437 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00200 Cma-Chr1:910054 Cma08g00571 Cma-Chr8:3258050 0 dispersed
Cma01g00200 Cma-Chr1:910054 Cma14g01039 Cma-Chr14:5470037 0 wgd
Cma01g00200 Cma-Chr1:910054 Cma17g00916 Cma-Chr17:6899532 0 wgd
Cma01g00200 Cma-Chr1:910054 Cma08g00570 Cma-Chr8:3253231 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00200 K01904 - csv:101215427 867.07