Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00207 ATGGAGTTGGGCTTGCGGCTGGGAGATCAACAACAAACCCACAACCACAACCCTAAGCTCCTTCCCTCTTTTTTTCACCCTCCGCCCATTCTTCACCTCGCTCTTCTTCCTCCTACTCCTACTCCAGACGGCGGCGGCGGCGATGGGGAATCTCCATTAGTGTGCTCCTCGTTGGAGCTGGGATTGTATGAAGTGGAAGATCATCATCAGGGTAATAGCGACAGAGGTTGCTCCAGAGGCAGCGATGAAGATGATCAAATTTTGGGTTCCAGAAAGAAACTGCGCCTTTTCAGAGAACAGTCCGCGTTCCTTGAAGACTGCTTCAAAGATCATCATACACTTGACCCTCAGAAGCAAAAGGCAGAAGTTGCAAGAAGGCTAAATCTTCGTCCACGCCAAGTAGAAGTGTGGTTTCAAAACAGACGAGCAAGAACCAAGCTGAAGCAAACCGAAGTTGACTGTGAATACTTGAAAAACTGTTGCCAAACACTAACCCAAGAAAACAGGAAGCTTCGAAAGGAGCTTCAAGATTTAAGAGCTTTGAAAACAACTGATTCTCTCTTCATGCATTCCCCCGCCACCACTCTCACCATGTGTGCGTCTTGTGAACGCGCCGCCCTTATTCAGCCGGTGAACTCCAAGGCTTCTGGGTTTTCGTTTACTTCAAATGGGTCCTCTTCATTTTCACCCACTGATCCTTCTACAAACAATAATTAG 717 47.7 MELGLRLGDQQQTHNHNPKLLPSFFHPPPILHLALLPPTPTPDGGGGDGESPLVCSSLELGLYEVEDHHQGNSDRGCSRGSDEDDQILGSRKKLRLFREQSAFLEDCFKDHHTLDPQKQKAEVARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQENRKLRKELQDLRALKTTDSLFMHSPATTLTMCASCERAALIQPVNSKASGFSFTSNGSSSFSPTDPSTNNN 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 941182 942830 + CmaCh01G002070.1 Cma01g00207 285900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00207 238 CDD homeodomain 91 149 IPR001356 GO:0003677
Cma01g00207 238 SMART halz 148 191 IPR003106 GO:0006355|GO:0043565
Cma01g00207 238 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Cma01g00207 238 Gene3D - 96 146 - -
Cma01g00207 238 MobiDBLite consensus disorder prediction 219 238 - -
Cma01g00207 238 SMART HOX_1 89 152 IPR001356 GO:0003677
Cma01g00207 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 67 230 - -
Cma01g00207 238 Pfam Homeobox associated leucine zipper 148 182 IPR003106 GO:0006355|GO:0043565
Cma01g00207 238 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Cma01g00207 238 Coils Coil 161 184 - -
Cma01g00207 238 PANTHER - 67 230 - -
Cma01g00207 238 ProSiteProfiles 'Homeobox' domain profile. 87 148 IPR001356 GO:0003677
Cma01g00207 238 Pfam Homeodomain 91 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00207 Cma-Chr1:941182 Cma14g00410 Cma-Chr14:1912100 2.80E-58 dispersed
Cma01g00207 Cma-Chr1:941182 Cma17g00930 Cma-Chr17:6988226 1.85E-63 wgd
Cma01g00207 Cma-Chr1:941182 Cma08g00556 Cma-Chr8:3178646 2.22E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34231 PF00046 Homeodomain 9.30E-13 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00207 K09338 - zju:107410227 203.756