Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00223 ATGGCGTTGGCTAGTCGCTTGAGATCCACCATCCCCGTCCTCAACAAGTTTTTGAGATTTGAATCGTCCTGCACTCCGCTCGCAAGGACTTATGCCGCTACATCAGGGAAACATGAACGAAAAGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTTTGTATATAGCTGCAGTAAAAGCTAATTCACTAGACAAGGTGGAGTCTGAGCTTTTTAACCTCGTTGAGGCTATTAAGAAAAGTCCTACATTTTCTCAGTTCACTATGGACCTGTCAGTTCCAGCGGAGACTAGAGTTAAAGCTATCAATGAAATTTCTGCTGAAGCAAAATTTTCAGACGTTGTTAAGAACTTTTTGGTTGTGTTAGCTGAGAATGGGAGGCTGAGATATATAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGAACGAACTGAAGGAGACATTGCAAGATATTATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAAAAGATTGATCCCAGCATACTTGGTGGTCTAATTGTAGAATTCGACGAGAAACTATTTGACATGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGTGCCAACCTGTTTCTCTTTGA 693 42.14 MALASRLRSTIPVLNKFLRFESSCTPLARTYAATSGKHERKVKVPLALFGGSGNYASALYIAAVKANSLDKVESELFNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYIDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEENELKETLQDIIGQGKKVKLEQKIDPSILGGLIVEFDEKLFDMSIKTRARQMERFLCQPVSL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1027840 1031043 + CmaCh01G002230.1 Cma01g00223 285916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00223 230 PANTHER ATP SYNTHASE DELTA CHAIN 21 224 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 Gene3D - 51 144 IPR026015 -
Cma01g00223 230 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 21 224 - -
Cma01g00223 230 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 54 223 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
Cma01g00223 230 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986|GO:0046933
Cma01g00223 230 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00223 Cma17g00952 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00223 Cma-Chr1:1027840 Cma01g00931 Cma-Chr1:5787559 1.56E-12 dispersed
Cma01g00223 Cma-Chr1:1027840 Cma14g01006 Cma-Chr14:5295228 1.52E-138 wgd
Cma01g00223 Cma-Chr1:1027840 Cma17g00952 Cma-Chr17:7086849 7.22E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00223 K02137 - tcc:18614630 341.273