Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00227 ATGAATCAATTAACTGTTGTTTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCATCAGACAACGATGCCGAAGGCTTCAAGTGTTTGATGGAGTCTGATTTGTTATCACTAAACAAGTCTGGGCTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGAACGCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAACTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAAAGCACTGCTCTCCACTGTGCTACCTCCAGTGGATCTGTGAATGCAGTCGATATTGTTGATTTACTTTTGTCTGCTGGTGCTGACCCTAACACAAAGGATATTAATGGCCATCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAATGTTCAGGCTCGAGGAACTTCTCAATAATCATTCAAATGGGTCCATGGATGCTTCCTGTTTACGTTTGTCAATCAAAATGCCTGATTCAGGGTCACCACCACTTTCCTCATCGTTGGAGGATGAATTTCCATCTCCACCCAAGTCGATGTCTTCTCCCAAATTTACTGATGGGTTTGCAACTACAAAGGAAAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGGCCTTGTTCTCGGGCATATTCCCATGATTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAAGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGTAAGGATGGCACGAGTTGCAATAGGCGGGTCTGTTTCTTTGCTCACACAAATGAAGAACTAAGGCCATTATATGTGTCTACTGGATCTGCTGTTCCGTCCCCACGATCGATTGGGTCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGATCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTGCTCAGTCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGTCGGTTAAGGTCATCTCTGAATGCCAGGGATATGCCTCTAGAGGATTTTAATGTCTTGCCAAACTTTGACAACCAGCCACGAATTTTGAATGATATTAACTGTTTCTCTCAGCCTCGTCCGAGTGCCATTTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTCGAAGAGCTGTTTTCTAATGAAATCCCTTTGTCTCCCCGATTCTCTGATCCAGCCACCAATGTCTTTTCCCCTACTCGCAAATCGACATTACTAAACCAATTTCAGCAGCAGCAGCAGAACATGTTATCACCTATAAATACAAGCATTATGTCTCCTAAGACTGTTGATCAGCCTTTGTTGCAGGCCTCTTTTGGAGTGTCATCGCCTGGAAGGATGTCGCCTAGAAGCACAGAGCCACTGTCTCCAATGGGATCTAGGTTTTCTGCTTTTGTACAGCGTGAAAAGCAACATCTCCGCAGTCTCAGCTCAAGGGAGCTTGGATCCAATGTCCCAAGCTCGTTGATTGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGAAGATCATCTTCTTTCGAGATCGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCGCCTGAGATGCTAAGAGAGAAGTCGGCAGCGCCCAGGATGGGTGGTGCTGCAGCATCCGGTGAGGGTCTAACTTCTACTAAATCACAATTAGAGTCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2106 45.39 MNQLTVVCEDSFYSLLELASDNDAEGFKCLMESDLLSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNTKDINGHRPVDVIFVHPKLQKQNTMFRLEELLNNHSNGSMDASCLRLSIKMPDSGSPPLSSSLEDEFPSPPKSMSSPKFTDGFATTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFAQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDFNVLPNFDNQPRILNDINCFSQPRPSAISVSRSGWTQTLTPNNLEELFSNEIPLSPRFSDPATNVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKTVDQPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRSLSSRELGSNVPSSLIGSPVNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLREKSAAPRMGGAAASGEGLTSTKSQLESTDHSVIGAWLEQMQLDQLVV 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1049928 1052033 - CmaCh01G002270.1 Cma01g00227 285920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00227 701 MobiDBLite consensus disorder prediction 176 202 - -
Cma01g00227 701 Gene3D - 273 336 - -
Cma01g00227 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Cma01g00227 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Cma01g00227 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Cma01g00227 701 SUPERFAMILY Ankyrin repeat 13 137 IPR036770 -
Cma01g00227 701 MobiDBLite consensus disorder prediction 177 202 - -
Cma01g00227 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 298 IPR000571 GO:0046872
Cma01g00227 701 Pfam Ankyrin repeats (3 copies) 50 126 IPR002110 GO:0005515
Cma01g00227 701 Gene3D - 9 158 IPR036770 -
Cma01g00227 701 MobiDBLite consensus disorder prediction 649 679 - -
Cma01g00227 701 ProSiteProfiles Zinc finger C3H1-type profile. 278 300 IPR000571 GO:0046872
Cma01g00227 701 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 699 - -
Cma01g00227 701 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Cma01g00227 701 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Cma01g00227 701 SMART c3hfinal6 308 331 IPR000571 GO:0046872
Cma01g00227 701 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Cma01g00227 701 PANTHER UNKEMPT FAMILY MEMBER 1 699 IPR045234 -
Cma01g00227 701 MobiDBLite consensus disorder prediction 378 398 - -
Cma01g00227 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00227 Cma14g01003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00227 Cma-Chr1:1049928 Cma14g00450 Cma-Chr14:2142180 0 dispersed
Cma01g00227 Cma-Chr1:1049928 Cma14g01003 Cma-Chr14:5270069 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34233 PF12796 Ank_2 9.70E-11 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00227 - - csv:101205376 1245.72