Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00242 | ATGGGTCGAGGGAAGATTGAAATCAAACGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCCAAGCGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGCTCTGGCATGAAACATACTCTTTCAAGATACAACAGATGTATAGAATCTTCAGAGACTCCGATAGACGGACACAAGGCTGAGTATCTTCATCTCCAGAAGCAAGAGCATGAGGAGGTAGACAATCTACGAGATGAAATAACGACTCTGCAAATGAAACAATTGCAGCTACTGGGAAAGGATCTAACTGGCTTGGGCTTCAAGGAATTGCAAAACCTAGAGCAACAACTAAATGAAGGGCTCTTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCTCCAGTCGACTGTCCGCTTCCTGCTTATCTTGAATACTGCTCCCTAGAGAAGAAGAAGGTGGGCATTAGAATCCCCGATGTCATCTGCAACTCCGAAATAGAAAGAGGAGATTCCGACACCACCTTGCACTTGGGGCTACCATCACATGTCTATTGCAAGAGAAAGGAGGCTGAAAGAGATACTCATTCAAATGATTCAAGGAGTCAAATGGGCCTACTCTGA | 729 | 44.17 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCIESSETPIDGHKAEYLHLQKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEKKKVGIRIPDVICNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSRSQMGLL | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1103977 | 1107495 | - | CmaCh01G002420.1 | Cma01g00242 | 285935 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00242 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Cma01g00242 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 | 1 | 220 | - | - | |
Cma01g00242 | 242 | Coils | Coil | 91 | 111 | - | - | |
Cma01g00242 | 242 | Pfam | K-box region | 91 | 164 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma01g00242 | 242 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | ProSiteProfiles | K-box domain profile. | 91 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma01g00242 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | Coils | Coil | 128 | 148 | - | - | |
Cma01g00242 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cma01g00242 | 242 | PANTHER | MADS BOX PROTEIN | 1 | 220 | - | - | |
Cma01g00242 | 242 | Gene3D | - | 14 | 100 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00242 | Cma-Chr1:1103977 | Cma03g00053 | Cma-Chr3:480593 | 1.28E-48 | dispersed | |
Cma01g00242 | Cma-Chr1:1103977 | Cma01g01466 | Cma-Chr1:10310670 | 2.07E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34234 | PF01486 | K-box | 1.20E-14 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00242 | - | - | cmax:111493101 | 438.728 |