Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00242 ATGGGTCGAGGGAAGATTGAAATCAAACGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCCAAGCGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGCTCTGGCATGAAACATACTCTTTCAAGATACAACAGATGTATAGAATCTTCAGAGACTCCGATAGACGGACACAAGGCTGAGTATCTTCATCTCCAGAAGCAAGAGCATGAGGAGGTAGACAATCTACGAGATGAAATAACGACTCTGCAAATGAAACAATTGCAGCTACTGGGAAAGGATCTAACTGGCTTGGGCTTCAAGGAATTGCAAAACCTAGAGCAACAACTAAATGAAGGGCTCTTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCTCCAGTCGACTGTCCGCTTCCTGCTTATCTTGAATACTGCTCCCTAGAGAAGAAGAAGGTGGGCATTAGAATCCCCGATGTCATCTGCAACTCCGAAATAGAAAGAGGAGATTCCGACACCACCTTGCACTTGGGGCTACCATCACATGTCTATTGCAAGAGAAAGGAGGCTGAAAGAGATACTCATTCAAATGATTCAAGGAGTCAAATGGGCCTACTCTGA 729 44.17 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCIESSETPIDGHKAEYLHLQKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEKKKVGIRIPDVICNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSRSQMGLL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1103977 1107495 - CmaCh01G002420.1 Cma01g00242 285935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00242 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cma01g00242 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 220 - -
Cma01g00242 242 Coils Coil 91 111 - -
Cma01g00242 242 Pfam K-box region 91 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00242 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cma01g00242 242 ProSiteProfiles K-box domain profile. 91 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00242 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 Coils Coil 128 148 - -
Cma01g00242 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma01g00242 242 PANTHER MADS BOX PROTEIN 1 220 - -
Cma01g00242 242 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00242 Cma-Chr1:1103977 Cma03g00053 Cma-Chr3:480593 1.28E-48 dispersed
Cma01g00242 Cma-Chr1:1103977 Cma01g01466 Cma-Chr1:10310670 2.07E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34234 PF01486 K-box 1.20E-14 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00242 - - cmax:111493101 438.728