Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00256 ATGGCGGCTGCAGCTACAACAAGCGTTGTGCCGCCGAATCGGCGGCGAGCGATTACCGCGCCGGAAGATAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGTATTAAGGATGATCTTCTCCGTGGAATATATGCATATGGTTTTGAAAAGCCCTCGGCCATTCAGCAAAGAGCCGTGAGGCCTATTATCGATGGTCGAGATGTCATTGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGCAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCTACTCAGACCGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATTAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACATTGCGTACCAGAGCCATTAAGTTGTTAGTTCTGGATGAATCTGATGAGATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAGCTTCAGGTTGTCTTGATTTCTGCTACTCTTCCTCATGAAATCTTGGAGATGACGAATAAGTTTATGACAGATCCTGTGAGGATCCTTGTGAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCCGTAATTTTCTGTAACACCAAGCGTAAGGTTGAATGGCTGACTGAGAAGATGCGCAGCAATAACTTCACAGTTTCACATATGCATGGAGACATGCCTCAAAAGGAAAGAGATGCAATTATGGGGGAGTTTCGATCGGGAACTACCCGTGTCCTAATCACTACTGATGTTTGGGCCCGAGGGCTTGATGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCTGGTCGGTTTGGGCGCAAGGGTGTTGCTATCAACTTCGTGAAAAGTGATGACATTAAGATCCTGAGAGATATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAG 1224 45.18 MAAAATTSVVPPNRRRAITAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIDGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1186484 1190363 + CmaCh01G002560.1 Cma01g00256 285949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00256 407 CDD SF2_C_DEAD 250 377 - -
Cma01g00256 407 Gene3D - 246 407 IPR027417 -
Cma01g00256 407 SMART helicmild6 290 368 IPR001650 -
Cma01g00256 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cma01g00256 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Cma01g00256 407 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cma01g00256 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 407 IPR001650 -
Cma01g00256 407 SMART ultradead3 56 253 IPR014001 -
Cma01g00256 407 Pfam Helicase conserved C-terminal domain 263 368 IPR001650 -
Cma01g00256 407 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Cma01g00256 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 400 - -
Cma01g00256 407 PANTHER BNAC03G41130D PROTEIN 22 400 - -
Cma01g00256 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 390 IPR027417 -
Cma01g00256 407 Gene3D - 27 245 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00256 Cma-Chr1:1186484 Cma17g00712 Cma-Chr17:5877920 8.92E-180 dispersed
Cma01g00256 Cma-Chr1:1186484 Cma14g00966 Cma-Chr14:5054263 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00256 K13025 - csv:101222664 790.03