Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00257 | ATGAAGAGTGTGCTGGCAATTACGGATGACACTGTTCTGGCTACCAGCGTCATTGTTAACGCTTTACAAGAGCTTGGGAATGGAGATGTTGCAAACTGTGATTCACAAATAATCACTCAAGCATTTTCTTTGAATAAGCTGCCACTTGGAGCTTCATCCATGGATGTTGTCATTTCTATCTGTAGATCCGCTTTTCCAAGTGATCAGATGCTTGAAGAAATCTCTAGAGTTCTGAAGCCTGGTGGGGTAATCTTTATTCACAAGACTTCACAGTCTGTTGCAGTTGAGAAAGATGAGTCCCCTGCCCTGGTGAGAAGATTACTTATAGCAGGCTTTCTAGAGGCTCAAGAAACCGAAAAGAAAATAGTTTCTCCATCTGAAGTAGAGAATCTTGTGATAAAAGCAAAGAAGCCTTCTTGGGCGATTGGCTCCTCTTTTTCCATTAAGAAGCCAGCAAAAATTTTACCAAAGATTCAGATTGATGACGATTCTGATTTGATTGATGAAGATAGTTTATTGACTGAGGAGGATTTGAAGAAACCCCAGCTACCATTAGTTGGTGACTGTGAAGTTGGCAGTACAAGAAAAGCTTGCAAGAACTGCAGTTGTGGTAGGGCTGAAGCAGAGGAAAAAGTAGAAAAGCTGGGATTGACTTCAGATTTGTTGGAAAATCCTCAATCTGCATGTGGCAACTGTGGACTGGGAGATGCGTTTCGGTGCAGTACGTGCCCGTACAAGGGTCTTCCAGCATTCAAACTTGGGGAGAAGGCGGGTTCCATCTTTTATGTATTTATGAAAGGTGGACGAAGAGGCGGCCGCAATGGAGTGGAAGTCAAGTTAGGATTTTCCAGGGTGAAGACAGAGCAATTAACCGCTACATGTTTTAGCTCCACTCTTACTTCCCCTTCTCCATTTTTCCCGCCGCAGCTATCCATTCAGTCGCCCACAGCTCATCGCTCAACTGGGATTCATCTCTTCTTCAATTTCCCATTTTCGCCTTGCTCATCTTCATCGTCTGAGCTATCCATTCACTCGCTGTCAGCAATGCCGGGGGCCGGTTCTCAAGGAGTGGAATGGCCGGCCAACCGCATAAGGGACACGTTTTTTCGGTTTTTTGAAGAGAAGAATCACGTTCAGTGGAAGTCTAGCCCCGTTGTGCCCGTCAACGATCCGACTCTTCTTTTTGCTAATGCGGGTATGAATCAGTTCAAGCCCATTTTCTTGGGCACTGCTGATCCTAATACGTCTTTGAGCAAGCTTACCCGAGCATATAACACTCAGAAATGTATTCGTGCTGGCGGGAAACACAATGATCTTGATGATGTTGGGAAAGACACTTATCACCATACTTTCTTTGAGATGCTTGGCAATTGGTCGTTCGGGGATTACTTTAAGAAGGAAGCCATCACATGGGCCTGGGAACTTCTTACTCAGATTTATAAGCTACCTACGGATCGATTTTATGCCACCTACTTCGGTGGTGATGAGAAAGCTGGTCTTGCACCTGATACTGAAGCTAGGGACATATGGCTGAAGTTTTTACCTGCTGAACGTGTCTTACCTTTTGGCTGCAAAGACAATTTTTGGGAAATGGGTGACACTGGTCCTTGTGGACCTTGCACTGAAATACATTATGACAGGCTTGGTGGTCGTGATGCTGCACGATTGTTCAACAGGGAAAATGATGGCTCCCTGAAATCTCTCCCAGCTAAGCATGTTGATACTGGTTTGGGATTTGAAAGGCTGACTTCGGCAACTGGAGCTCGGCCCTATAGTGGAAAAGTTGGACCAGATGATGTGGACAACATGGACGTGGCTTACAGGGTTGTTGCTGATCATATTAGAACTCTTTCAATTGCCATTGCTGATGGGTCTTGTCCAGGTAATGAGGGGCGTGAATATGTTTTGAGGCGTATTCTTCGTCGAGCAGTTCGATATGGAAGTGAAGTTTTAAAAGCTCAAGAAGGATTTTTCAATGGACTTGTAAGTACTGTGGTGAAAATGATGGGTGATGTCTTCCCAGAGCTAAAACAACATGAAGTGCGAATTAGGGAGATAATTGCAGAAGAGGAAGCAAGTTTTGGCAAAACTTTGCTGAAGGGAATTGAGAAATTTAAGAAGGCCGCTCAGGATGTACAAGGGAAGATATTGAGTGGGCAGGATGCTTTTATCTTGTGGGATACATATGGATTTCCATTAGATTTGACTCAGTTGATGGCGGAAGAGAGGGGCCTGCTAGTTGATACTCAGGGTTTCAATGATGCCATGGATGAGGCAAGGGAAAGATCAAGAAGTGCTCAAAATAAACAAGCAGGTGGTACTATTGTCATGGATGCTGATGCTACAGCAGCATTGCACAAAAAGGCAGTTGCTTCAACAGATGACAAATTCAAATTTATTTGGTTCAAGGACCATGAAAGTGTGGTGAAAGCTATTTACACTGGTTATGAATATCTGGAAAGTGTAGCAGCTGATAATGAAGTTGGTTTAGTTCTGGAATCTACAAGTTTTTACGCTGAGCAAGATCTTTTATACATGTCTGAGAATAGTAGTAGCCTTGGAATTTACTGTGAAAGAGAAAACTTTAAATTGTTTGAGCAATATACTGTTGTTAATTTGCTGGTCTGTTCTGCCCTTTGTCTGATTTTTGATACTGGATCAATTGAAGGTCCCTTCGGCTCATTTCAAGTATGTAATGTTCAAGTATTTGGAGGTTTCATCATACATATTGGTTCGTTTAATGGTGGGAGTGGCAGAATTTCCCTGGGTGACAAAGTTATTTGTAAGGTTGACTATGAGCGGCGTAAGCTCATTGCTCCTAACCATACTTGTACCCATATGTTGAATTTTGCTCTTAGGGAAATACTTGGAAATCATGTTGACCAGAAGGGTTCTGTTGTTCTTCCTGAAAAACTGCGATTTGATTTTTCTCATGGCAAGCCAGTGGATCCTGATGATTTGAGAAAAATAGAATCAATTGTGAACAAACAAATAGAAGATGAACTGGTTGTAAATGCTAAGGAGGTAACCCTTGCTGAGGCTAAGCGTATTAATGGGTTACGAGCTGTTTTTGGAGAAGTCTATCCCGACCCAGTTAGAGTTGTTGCCATTGGGAAAAATGTTGAGGAACTCCTGGCTGATCCAGATAATGCAAACTGGTTATCCATTTCTTCAGAGCTGTGTGGAGGGACCCATATATCAAATACGCGGGAAGCAAAGGCATTCGCCCTTCTATCTGAAGAAGGAATTGCTAAGGGGATTCGAAGAATTACTGCCGTTACCACTGATTCTGCCTTTAAAGCAATCGAGCAGGCTCAATCACTTGAGCAGGAAGTTGACGATGCTTTTAACATAGATGGTAGCTTGCTGGAAAAGGTGGTTGCTTCATTTAAAAACCGTGTTGATTCAGCATCAATTCCTGCTGCTAAAAAAGCACAAATTAGGGCAATGATCGCCTCGCTCCAGATTGAATTAAAGAAGGCTCAGAAGAAGCTTGCCGAAGAAAATATGCAGAAAGCTGTCAAGATTGCCGTTGAAACGGCAGAAATAGCTTCTTCAGATGGCAAGGCCTTCTGTATATCCCATGTAAATGTTGGTTTGGATGCAGCCGCAGTTCGTGAAGCAGTGCACAAAGTAATGGAACAGAAGGGCTTATCCGCGATGGTTTTTAGCACTGATGAAACCACAAATAAAGTTGTTGTCTGTGCTGGGGTTCCTCCAGAAGGGAGTCGAGGAAAGCCATTAGAGGTATCAGAGTGGTTGACAATAGCTTTGCAGCCACTAAAAGGAAGATGCGGGAAGGGGAAAGGTGGCCTCGCTACGGGCCAGCCTCTTTCTTCTCCGGCGGAGGCCGATTCGGCTGCCATGTCTCGCCAAGTTCCGATCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTGGGAGATGAGATCGGGAAAGGAGCATATGGGCGAGTTTACAAAGGTCTGGATTTGGAGAATGGGGATTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACGTTATCATGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTCTGAAAACAAAGTCTCACCTTCACATAATACTCGAGTATGTGGAAAATGGATCATTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCACTTTATATTTCTCAGGAGGAGGCTACTGTGGCTAATTGCTGGAACAAAGATCAAAATGATTGGGATCTTGGTTTAGGGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCAGATGTTAATACGCATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTAATCGAAATGTCAGGAGTTTGTGCTGCTTCCGACATTTGGAGTGTTGGATGTACTGTGATTGAACTGCTTACATGTGTACCTCCATACTATGATCTACAACCTATGCCCGCTCTTTTTCGCATTGTTCAGGACAAGCATCCTCCAATTCCAGATAGCCTATCACCAGACATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCGAAAACTTTGCTTTCTCATCCTTGGGTACAGAATTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGCGGCACATTGAGAAACACTCAACTAGATGGATCACCAGGAGCAGAAATTTCTAATGGAGACGATCAAAACTCTTGTGAAAGTCCTTCGGCGGAGAAAAATGAAATTGCTGGTTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTCGCATCAGATGTTGCCACTGATACGAGCAATTCCCAAAAACATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAGCCATAGAAGAAGATACTCTATTGGATCAAGTTCCAACCTTATCCATTCGTGATAATTTATCTCTTCTAAATGGTTCAGGAAGACTTGCAACCTCTGAGCCGACTGAGTTTCATGAATCTCATGGTAGAGCCCATGATGAAGTGATAATGAATGGAGGAGTGCCATCGGCAGAACTAAGAAAAGTTGCGTCTAGGAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAATAGCTCGTTTGGTTTTGGACCTGAAGGTCATGATAATTGTTTTCAAAAGGTGTCGTTGTTGATTTCTTACTTTTGTTAG | 5220 | 43.07 | MKSVLAITDDTVLATSVIVNALQELGNGDVANCDSQIITQAFSLNKLPLGASSMDVVISICRSAFPSDQMLEEISRVLKPGGVIFIHKTSQSVAVEKDESPALVRRLLIAGFLEAQETEKKIVSPSEVENLVIKAKKPSWAIGSSFSIKKPAKILPKIQIDDDSDLIDEDSLLTEEDLKKPQLPLVGDCEVGSTRKACKNCSCGRAEAEEKVEKLGLTSDLLENPQSACGNCGLGDAFRCSTCPYKGLPAFKLGEKAGSIFYVFMKGGRRGGRNGVEVKLGFSRVKTEQLTATCFSSTLTSPSPFFPPQLSIQSPTAHRSTGIHLFFNFPFSPCSSSSSELSIHSLSAMPGAGSQGVEWPANRIRDTFFRFFEEKNHVQWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRAYNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWELLTQIYKLPTDRFYATYFGGDEKAGLAPDTEARDIWLKFLPAERVLPFGCKDNFWEMGDTGPCGPCTEIHYDRLGGRDAARLFNRENDGSLKSLPAKHVDTGLGFERLTSATGARPYSGKVGPDDVDNMDVAYRVVADHIRTLSIAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVSTVVKMMGDVFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQDAFILWDTYGFPLDLTQLMAEERGLLVDTQGFNDAMDEARERSRSAQNKQAGGTIVMDADATAALHKKAVASTDDKFKFIWFKDHESVVKAIYTGYEYLESVAADNEVGLVLESTSFYAEQDLLYMSENSSSLGIYCERENFKLFEQYTVVNLLVCSALCLIFDTGSIEGPFGSFQVCNVQVFGGFIIHIGSFNGGSGRISLGDKVICKVDYERRKLIAPNHTCTHMLNFALREILGNHVDQKGSVVLPEKLRFDFSHGKPVDPDDLRKIESIVNKQIEDELVVNAKEVTLAEAKRINGLRAVFGEVYPDPVRVVAIGKNVEELLADPDNANWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDSAFKAIEQAQSLEQEVDDAFNIDGSLLEKVVASFKNRVDSASIPAAKKAQIRAMIASLQIELKKAQKKLAEENMQKAVKIAVETAEIASSDGKAFCISHVNVGLDAAAVREAVHKVMEQKGLSAMVFSTDETTNKVVVCAGVPPEGSRGKPLEVSEWLTIALQPLKGRCGKGKGGLATGQPLSSPAEADSAAMSRQVPITAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNVIMNLNHKNIVKYLGSLKTKSHLHIILEYVENGSFANIIKPNKFGPFPESLVALYISQEEATVANCWNKDQNDWDLGLGGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWVQNCRRALHSSLRHSGTLRNTQLDGSPGAEISNGDDQNSCESPSAEKNEIAGSDFKADSRKEFASDVATDTSNSQKHFASGPNFVEEGEAIEEDTLLDQVPTLSIRDNLSLLNGSGRLATSEPTEFHESHGRAHDEVIMNGGVPSAELRKVASRKHGEKETSTTSGNSSFGFGPEGHDNCFQKVSLLISYFC | 1739 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1197052 | 1221873 | - | CmaCh01G002570.1 | Cma01g00257 | 285950 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00257 | 1739 | SMART | tRNA_SAD_4 | 1032 | 1091 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
Cma01g00257 | 1739 | Pfam | tRNA synthetases class II (A) | 364 | 841 | IPR018164 | GO:0000166|GO:0004813|GO:0005524|GO:0006419 | |
Cma01g00257 | 1739 | Gene3D | Vaccinia Virus protein VP39 | 1 | 147 | IPR029063 | - | |
Cma01g00257 | 1739 | MobiDBLite | consensus disorder prediction | 1697 | 1717 | - | - | |
Cma01g00257 | 1739 | Pfam | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | 189 | 256 | IPR046408 | - | |
Cma01g00257 | 1739 | MobiDBLite | consensus disorder prediction | 1562 | 1600 | - | - | |
Cma01g00257 | 1739 | CDD | STKc_Cdc7_like | 1307 | 1548 | - | - | |
Cma01g00257 | 1739 | Pfam | DHHA1 domain | 1152 | 1276 | IPR003156 | GO:0003676 | |
Cma01g00257 | 1739 | Pfam | Protein kinase domain | 1309 | 1548 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00257 | 1739 | Gene3D | Bira Bifunctional Protein; Domain 2 | 360 | 589 | IPR045864 | - | |
Cma01g00257 | 1739 | ProSiteProfiles | Alanyl-transfer RNA synthetases family profile. | 359 | 1104 | IPR018165 | GO:0003676|GO:0004813|GO:0005524|GO:0006419 | |
Cma01g00257 | 1739 | PANTHER | BNACNNG61840D PROTEIN | 344 | 584 | - | - | |
Cma01g00257 | 1739 | PANTHER | BNACNNG61840D PROTEIN | 584 | 842 | - | - | |
Cma01g00257 | 1739 | MobiDBLite | consensus disorder prediction | 1562 | 1593 | - | - | |
Cma01g00257 | 1739 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1410 | 1566 | - | - | |
Cma01g00257 | 1739 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 1032 | 1090 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
Cma01g00257 | 1739 | SUPERFAMILY | ThrRS/AlaRS common domain | 930 | 1108 | IPR018163 | GO:0000166 | |
Cma01g00257 | 1739 | ProSiteProfiles | Protein kinase domain profile. | 1308 | 1548 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00257 | 1739 | SUPERFAMILY | Class II aaRS and biotin synthetases | 360 | 585 | IPR045864 | - | |
Cma01g00257 | 1739 | PANTHER | ALANYL-TRNA SYNTHETASE | 344 | 584 | - | - | |
Cma01g00257 | 1739 | PANTHER | ALANYL-TRNA SYNTHETASE | 881 | 1277 | - | - | |
Cma01g00257 | 1739 | PANTHER | ALANYL-TRNA SYNTHETASE | 584 | 842 | - | - | |
Cma01g00257 | 1739 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 41 | 89 | IPR029063 | - | |
Cma01g00257 | 1739 | SUPERFAMILY | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 594 | 770 | IPR018162 | GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 | |
Cma01g00257 | 1739 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1314 | 1337 | IPR017441 | GO:0005524 | |
Cma01g00257 | 1739 | Gene3D | - | 931 | 1107 | - | - | |
Cma01g00257 | 1739 | SUPERFAMILY | Protein kinase-like (PK-like) | 1290 | 1559 | IPR011009 | - | |
Cma01g00257 | 1739 | CDD | AlaRS_core | 361 | 586 | - | - | |
Cma01g00257 | 1739 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1292 | 1409 | - | - | |
Cma01g00257 | 1739 | PRINTS | Alanyl-tRNA synthetase signature | 608 | 624 | IPR002318 | GO:0000166|GO:0005737 | |
Cma01g00257 | 1739 | PRINTS | Alanyl-tRNA synthetase signature | 437 | 448 | IPR002318 | GO:0000166|GO:0005737 | |
Cma01g00257 | 1739 | PRINTS | Alanyl-tRNA synthetase signature | 632 | 645 | IPR002318 | GO:0000166|GO:0005737 | |
Cma01g00257 | 1739 | PANTHER | BNACNNG61840D PROTEIN | 881 | 1277 | - | - | |
Cma01g00257 | 1739 | Pfam | Methyltransferase domain | 40 | 86 | IPR013216 | GO:0008168 | |
Cma01g00257 | 1739 | Coils | Coil | 1144 | 1171 | - | - | |
Cma01g00257 | 1739 | Hamap | Fe-S cluster assembly protein <gene_name> [DRE2]. | 1 | 290 | IPR007785 | GO:0005737|GO:0016226|GO:0051536 | |
Cma01g00257 | 1739 | CDD | AdoMet_MTases | 2 | 87 | - | - | |
Cma01g00257 | 1739 | Hamap | Alanine--tRNA ligase [alaS]. | 359 | 1303 | IPR023033 | GO:0004813 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00257 | Cma-Chr1:1197052 | Cma17g00258 | Cma-Chr17:1332965 | 1.85E-52 | dispersed | |
Cma02g00281 | Cma-Chr2:1290363 | Cma01g00257 | Cma-Chr1:1197052 | 1.19E-11 | transposed | |
Cma14g00964 | Cma-Chr14:5011091 | Cma01g00257 | Cma-Chr1:1197052 | 0 | transposed | |
Cma14g00965 | Cma-Chr14:5026924 | Cma01g00257 | Cma-Chr1:1197052 | 0 | transposed | |
Cma01g00257 | Cma-Chr1:1197052 | Cma14g00961 | Cma-Chr14:4997589 | 8.77E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68248 | PF01411 | tRNA-synt_2c | 2.00E-164 | CL0040 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00257 | K01872 | - | csv:101222905 | 1621.68 |