Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00257 ATGAAGAGTGTGCTGGCAATTACGGATGACACTGTTCTGGCTACCAGCGTCATTGTTAACGCTTTACAAGAGCTTGGGAATGGAGATGTTGCAAACTGTGATTCACAAATAATCACTCAAGCATTTTCTTTGAATAAGCTGCCACTTGGAGCTTCATCCATGGATGTTGTCATTTCTATCTGTAGATCCGCTTTTCCAAGTGATCAGATGCTTGAAGAAATCTCTAGAGTTCTGAAGCCTGGTGGGGTAATCTTTATTCACAAGACTTCACAGTCTGTTGCAGTTGAGAAAGATGAGTCCCCTGCCCTGGTGAGAAGATTACTTATAGCAGGCTTTCTAGAGGCTCAAGAAACCGAAAAGAAAATAGTTTCTCCATCTGAAGTAGAGAATCTTGTGATAAAAGCAAAGAAGCCTTCTTGGGCGATTGGCTCCTCTTTTTCCATTAAGAAGCCAGCAAAAATTTTACCAAAGATTCAGATTGATGACGATTCTGATTTGATTGATGAAGATAGTTTATTGACTGAGGAGGATTTGAAGAAACCCCAGCTACCATTAGTTGGTGACTGTGAAGTTGGCAGTACAAGAAAAGCTTGCAAGAACTGCAGTTGTGGTAGGGCTGAAGCAGAGGAAAAAGTAGAAAAGCTGGGATTGACTTCAGATTTGTTGGAAAATCCTCAATCTGCATGTGGCAACTGTGGACTGGGAGATGCGTTTCGGTGCAGTACGTGCCCGTACAAGGGTCTTCCAGCATTCAAACTTGGGGAGAAGGCGGGTTCCATCTTTTATGTATTTATGAAAGGTGGACGAAGAGGCGGCCGCAATGGAGTGGAAGTCAAGTTAGGATTTTCCAGGGTGAAGACAGAGCAATTAACCGCTACATGTTTTAGCTCCACTCTTACTTCCCCTTCTCCATTTTTCCCGCCGCAGCTATCCATTCAGTCGCCCACAGCTCATCGCTCAACTGGGATTCATCTCTTCTTCAATTTCCCATTTTCGCCTTGCTCATCTTCATCGTCTGAGCTATCCATTCACTCGCTGTCAGCAATGCCGGGGGCCGGTTCTCAAGGAGTGGAATGGCCGGCCAACCGCATAAGGGACACGTTTTTTCGGTTTTTTGAAGAGAAGAATCACGTTCAGTGGAAGTCTAGCCCCGTTGTGCCCGTCAACGATCCGACTCTTCTTTTTGCTAATGCGGGTATGAATCAGTTCAAGCCCATTTTCTTGGGCACTGCTGATCCTAATACGTCTTTGAGCAAGCTTACCCGAGCATATAACACTCAGAAATGTATTCGTGCTGGCGGGAAACACAATGATCTTGATGATGTTGGGAAAGACACTTATCACCATACTTTCTTTGAGATGCTTGGCAATTGGTCGTTCGGGGATTACTTTAAGAAGGAAGCCATCACATGGGCCTGGGAACTTCTTACTCAGATTTATAAGCTACCTACGGATCGATTTTATGCCACCTACTTCGGTGGTGATGAGAAAGCTGGTCTTGCACCTGATACTGAAGCTAGGGACATATGGCTGAAGTTTTTACCTGCTGAACGTGTCTTACCTTTTGGCTGCAAAGACAATTTTTGGGAAATGGGTGACACTGGTCCTTGTGGACCTTGCACTGAAATACATTATGACAGGCTTGGTGGTCGTGATGCTGCACGATTGTTCAACAGGGAAAATGATGGCTCCCTGAAATCTCTCCCAGCTAAGCATGTTGATACTGGTTTGGGATTTGAAAGGCTGACTTCGGCAACTGGAGCTCGGCCCTATAGTGGAAAAGTTGGACCAGATGATGTGGACAACATGGACGTGGCTTACAGGGTTGTTGCTGATCATATTAGAACTCTTTCAATTGCCATTGCTGATGGGTCTTGTCCAGGTAATGAGGGGCGTGAATATGTTTTGAGGCGTATTCTTCGTCGAGCAGTTCGATATGGAAGTGAAGTTTTAAAAGCTCAAGAAGGATTTTTCAATGGACTTGTAAGTACTGTGGTGAAAATGATGGGTGATGTCTTCCCAGAGCTAAAACAACATGAAGTGCGAATTAGGGAGATAATTGCAGAAGAGGAAGCAAGTTTTGGCAAAACTTTGCTGAAGGGAATTGAGAAATTTAAGAAGGCCGCTCAGGATGTACAAGGGAAGATATTGAGTGGGCAGGATGCTTTTATCTTGTGGGATACATATGGATTTCCATTAGATTTGACTCAGTTGATGGCGGAAGAGAGGGGCCTGCTAGTTGATACTCAGGGTTTCAATGATGCCATGGATGAGGCAAGGGAAAGATCAAGAAGTGCTCAAAATAAACAAGCAGGTGGTACTATTGTCATGGATGCTGATGCTACAGCAGCATTGCACAAAAAGGCAGTTGCTTCAACAGATGACAAATTCAAATTTATTTGGTTCAAGGACCATGAAAGTGTGGTGAAAGCTATTTACACTGGTTATGAATATCTGGAAAGTGTAGCAGCTGATAATGAAGTTGGTTTAGTTCTGGAATCTACAAGTTTTTACGCTGAGCAAGATCTTTTATACATGTCTGAGAATAGTAGTAGCCTTGGAATTTACTGTGAAAGAGAAAACTTTAAATTGTTTGAGCAATATACTGTTGTTAATTTGCTGGTCTGTTCTGCCCTTTGTCTGATTTTTGATACTGGATCAATTGAAGGTCCCTTCGGCTCATTTCAAGTATGTAATGTTCAAGTATTTGGAGGTTTCATCATACATATTGGTTCGTTTAATGGTGGGAGTGGCAGAATTTCCCTGGGTGACAAAGTTATTTGTAAGGTTGACTATGAGCGGCGTAAGCTCATTGCTCCTAACCATACTTGTACCCATATGTTGAATTTTGCTCTTAGGGAAATACTTGGAAATCATGTTGACCAGAAGGGTTCTGTTGTTCTTCCTGAAAAACTGCGATTTGATTTTTCTCATGGCAAGCCAGTGGATCCTGATGATTTGAGAAAAATAGAATCAATTGTGAACAAACAAATAGAAGATGAACTGGTTGTAAATGCTAAGGAGGTAACCCTTGCTGAGGCTAAGCGTATTAATGGGTTACGAGCTGTTTTTGGAGAAGTCTATCCCGACCCAGTTAGAGTTGTTGCCATTGGGAAAAATGTTGAGGAACTCCTGGCTGATCCAGATAATGCAAACTGGTTATCCATTTCTTCAGAGCTGTGTGGAGGGACCCATATATCAAATACGCGGGAAGCAAAGGCATTCGCCCTTCTATCTGAAGAAGGAATTGCTAAGGGGATTCGAAGAATTACTGCCGTTACCACTGATTCTGCCTTTAAAGCAATCGAGCAGGCTCAATCACTTGAGCAGGAAGTTGACGATGCTTTTAACATAGATGGTAGCTTGCTGGAAAAGGTGGTTGCTTCATTTAAAAACCGTGTTGATTCAGCATCAATTCCTGCTGCTAAAAAAGCACAAATTAGGGCAATGATCGCCTCGCTCCAGATTGAATTAAAGAAGGCTCAGAAGAAGCTTGCCGAAGAAAATATGCAGAAAGCTGTCAAGATTGCCGTTGAAACGGCAGAAATAGCTTCTTCAGATGGCAAGGCCTTCTGTATATCCCATGTAAATGTTGGTTTGGATGCAGCCGCAGTTCGTGAAGCAGTGCACAAAGTAATGGAACAGAAGGGCTTATCCGCGATGGTTTTTAGCACTGATGAAACCACAAATAAAGTTGTTGTCTGTGCTGGGGTTCCTCCAGAAGGGAGTCGAGGAAAGCCATTAGAGGTATCAGAGTGGTTGACAATAGCTTTGCAGCCACTAAAAGGAAGATGCGGGAAGGGGAAAGGTGGCCTCGCTACGGGCCAGCCTCTTTCTTCTCCGGCGGAGGCCGATTCGGCTGCCATGTCTCGCCAAGTTCCGATCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTGGGAGATGAGATCGGGAAAGGAGCATATGGGCGAGTTTACAAAGGTCTGGATTTGGAGAATGGGGATTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACGTTATCATGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTCTGAAAACAAAGTCTCACCTTCACATAATACTCGAGTATGTGGAAAATGGATCATTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCACTTTATATTTCTCAGGAGGAGGCTACTGTGGCTAATTGCTGGAACAAAGATCAAAATGATTGGGATCTTGGTTTAGGGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCAGATGTTAATACGCATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTAATCGAAATGTCAGGAGTTTGTGCTGCTTCCGACATTTGGAGTGTTGGATGTACTGTGATTGAACTGCTTACATGTGTACCTCCATACTATGATCTACAACCTATGCCCGCTCTTTTTCGCATTGTTCAGGACAAGCATCCTCCAATTCCAGATAGCCTATCACCAGACATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCGAAAACTTTGCTTTCTCATCCTTGGGTACAGAATTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGCGGCACATTGAGAAACACTCAACTAGATGGATCACCAGGAGCAGAAATTTCTAATGGAGACGATCAAAACTCTTGTGAAAGTCCTTCGGCGGAGAAAAATGAAATTGCTGGTTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTCGCATCAGATGTTGCCACTGATACGAGCAATTCCCAAAAACATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAGCCATAGAAGAAGATACTCTATTGGATCAAGTTCCAACCTTATCCATTCGTGATAATTTATCTCTTCTAAATGGTTCAGGAAGACTTGCAACCTCTGAGCCGACTGAGTTTCATGAATCTCATGGTAGAGCCCATGATGAAGTGATAATGAATGGAGGAGTGCCATCGGCAGAACTAAGAAAAGTTGCGTCTAGGAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAATAGCTCGTTTGGTTTTGGACCTGAAGGTCATGATAATTGTTTTCAAAAGGTGTCGTTGTTGATTTCTTACTTTTGTTAG 5220 43.07 MKSVLAITDDTVLATSVIVNALQELGNGDVANCDSQIITQAFSLNKLPLGASSMDVVISICRSAFPSDQMLEEISRVLKPGGVIFIHKTSQSVAVEKDESPALVRRLLIAGFLEAQETEKKIVSPSEVENLVIKAKKPSWAIGSSFSIKKPAKILPKIQIDDDSDLIDEDSLLTEEDLKKPQLPLVGDCEVGSTRKACKNCSCGRAEAEEKVEKLGLTSDLLENPQSACGNCGLGDAFRCSTCPYKGLPAFKLGEKAGSIFYVFMKGGRRGGRNGVEVKLGFSRVKTEQLTATCFSSTLTSPSPFFPPQLSIQSPTAHRSTGIHLFFNFPFSPCSSSSSELSIHSLSAMPGAGSQGVEWPANRIRDTFFRFFEEKNHVQWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRAYNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWELLTQIYKLPTDRFYATYFGGDEKAGLAPDTEARDIWLKFLPAERVLPFGCKDNFWEMGDTGPCGPCTEIHYDRLGGRDAARLFNRENDGSLKSLPAKHVDTGLGFERLTSATGARPYSGKVGPDDVDNMDVAYRVVADHIRTLSIAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVSTVVKMMGDVFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQDAFILWDTYGFPLDLTQLMAEERGLLVDTQGFNDAMDEARERSRSAQNKQAGGTIVMDADATAALHKKAVASTDDKFKFIWFKDHESVVKAIYTGYEYLESVAADNEVGLVLESTSFYAEQDLLYMSENSSSLGIYCERENFKLFEQYTVVNLLVCSALCLIFDTGSIEGPFGSFQVCNVQVFGGFIIHIGSFNGGSGRISLGDKVICKVDYERRKLIAPNHTCTHMLNFALREILGNHVDQKGSVVLPEKLRFDFSHGKPVDPDDLRKIESIVNKQIEDELVVNAKEVTLAEAKRINGLRAVFGEVYPDPVRVVAIGKNVEELLADPDNANWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDSAFKAIEQAQSLEQEVDDAFNIDGSLLEKVVASFKNRVDSASIPAAKKAQIRAMIASLQIELKKAQKKLAEENMQKAVKIAVETAEIASSDGKAFCISHVNVGLDAAAVREAVHKVMEQKGLSAMVFSTDETTNKVVVCAGVPPEGSRGKPLEVSEWLTIALQPLKGRCGKGKGGLATGQPLSSPAEADSAAMSRQVPITAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNVIMNLNHKNIVKYLGSLKTKSHLHIILEYVENGSFANIIKPNKFGPFPESLVALYISQEEATVANCWNKDQNDWDLGLGGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWVQNCRRALHSSLRHSGTLRNTQLDGSPGAEISNGDDQNSCESPSAEKNEIAGSDFKADSRKEFASDVATDTSNSQKHFASGPNFVEEGEAIEEDTLLDQVPTLSIRDNLSLLNGSGRLATSEPTEFHESHGRAHDEVIMNGGVPSAELRKVASRKHGEKETSTTSGNSSFGFGPEGHDNCFQKVSLLISYFC 1739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1197052 1221873 - CmaCh01G002570.1 Cma01g00257 285950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00257 1739 SMART tRNA_SAD_4 1032 1091 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cma01g00257 1739 Pfam tRNA synthetases class II (A) 364 841 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Cma01g00257 1739 Gene3D Vaccinia Virus protein VP39 1 147 IPR029063 -
Cma01g00257 1739 MobiDBLite consensus disorder prediction 1697 1717 - -
Cma01g00257 1739 Pfam Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis 189 256 IPR046408 -
Cma01g00257 1739 MobiDBLite consensus disorder prediction 1562 1600 - -
Cma01g00257 1739 CDD STKc_Cdc7_like 1307 1548 - -
Cma01g00257 1739 Pfam DHHA1 domain 1152 1276 IPR003156 GO:0003676
Cma01g00257 1739 Pfam Protein kinase domain 1309 1548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00257 1739 Gene3D Bira Bifunctional Protein; Domain 2 360 589 IPR045864 -
Cma01g00257 1739 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 359 1104 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Cma01g00257 1739 PANTHER BNACNNG61840D PROTEIN 344 584 - -
Cma01g00257 1739 PANTHER BNACNNG61840D PROTEIN 584 842 - -
Cma01g00257 1739 MobiDBLite consensus disorder prediction 1562 1593 - -
Cma01g00257 1739 Gene3D Transferase(Phosphotransferase) domain 1 1410 1566 - -
Cma01g00257 1739 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 1032 1090 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cma01g00257 1739 SUPERFAMILY ThrRS/AlaRS common domain 930 1108 IPR018163 GO:0000166
Cma01g00257 1739 ProSiteProfiles Protein kinase domain profile. 1308 1548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00257 1739 SUPERFAMILY Class II aaRS and biotin synthetases 360 585 IPR045864 -
Cma01g00257 1739 PANTHER ALANYL-TRNA SYNTHETASE 344 584 - -
Cma01g00257 1739 PANTHER ALANYL-TRNA SYNTHETASE 881 1277 - -
Cma01g00257 1739 PANTHER ALANYL-TRNA SYNTHETASE 584 842 - -
Cma01g00257 1739 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 89 IPR029063 -
Cma01g00257 1739 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 594 770 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Cma01g00257 1739 ProSitePatterns Protein kinases ATP-binding region signature. 1314 1337 IPR017441 GO:0005524
Cma01g00257 1739 Gene3D - 931 1107 - -
Cma01g00257 1739 SUPERFAMILY Protein kinase-like (PK-like) 1290 1559 IPR011009 -
Cma01g00257 1739 CDD AlaRS_core 361 586 - -
Cma01g00257 1739 Gene3D Transferase(Phosphotransferase) domain 1 1292 1409 - -
Cma01g00257 1739 PRINTS Alanyl-tRNA synthetase signature 608 624 IPR002318 GO:0000166|GO:0005737
Cma01g00257 1739 PRINTS Alanyl-tRNA synthetase signature 437 448 IPR002318 GO:0000166|GO:0005737
Cma01g00257 1739 PRINTS Alanyl-tRNA synthetase signature 632 645 IPR002318 GO:0000166|GO:0005737
Cma01g00257 1739 PANTHER BNACNNG61840D PROTEIN 881 1277 - -
Cma01g00257 1739 Pfam Methyltransferase domain 40 86 IPR013216 GO:0008168
Cma01g00257 1739 Coils Coil 1144 1171 - -
Cma01g00257 1739 Hamap Fe-S cluster assembly protein <gene_name> [DRE2]. 1 290 IPR007785 GO:0005737|GO:0016226|GO:0051536
Cma01g00257 1739 CDD AdoMet_MTases 2 87 - -
Cma01g00257 1739 Hamap Alanine--tRNA ligase [alaS]. 359 1303 IPR023033 GO:0004813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00257 Cma-Chr1:1197052 Cma17g00258 Cma-Chr17:1332965 1.85E-52 dispersed
Cma02g00281 Cma-Chr2:1290363 Cma01g00257 Cma-Chr1:1197052 1.19E-11 transposed
Cma14g00964 Cma-Chr14:5011091 Cma01g00257 Cma-Chr1:1197052 0 transposed
Cma14g00965 Cma-Chr14:5026924 Cma01g00257 Cma-Chr1:1197052 0 transposed
Cma01g00257 Cma-Chr1:1197052 Cma14g00961 Cma-Chr14:4997589 8.77E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68248 PF01411 tRNA-synt_2c 2.00E-164 CL0040 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00257 K01872 - csv:101222905 1621.68