Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00262 ATGGAGACTGGTTATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTATGGATTTGAGGGCTGCTGTTGGGAAGAAGAGCCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTATTGCTAGGCCTTTAAATTTGGTGGAGTCTGATCATTTAGGTAGCCAAGTTTTTCCAATTGTCTCTGGGATTCCCTTGACCGGTGGCTCGTCGAACAGTTCGTCGTCGTGTTCTGATGAAGCTAATATGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGATAATGTTATGGAAGATGAGAATCTTAATGATGAAGCTCGTAGTTTGAGTTTGAAGGTTGGTGGAAATGGTTGTCAAATTGTTGAGAAAGAAGCAGGGAATTGGGAAGGAAGTAGTGGCAAGAAGACTAAACTGACCGGGGGAAACTCGAGTCGTGCGGTTTGCCAGGTAGAGGACTGTGGAGCTGATCTTAGCAATGCTAAAGATTATCACAGAAGACATAAAGTCTGCGAAATGCATTCGAAGGTGAGTAATGCGCTCGTTGCTAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAGGAGTTCGATGAAGGAAAACGGAGTTGTCGAAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAGAACAATCCTGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTCTAATGCGAATACTCGCAAATTTGCACTCCAATGGATCAAATAAGACCACAGACCAAGATCTTCTTTCGAATCTTATACGGATCCTTGCCTGTCAATCCGGTGAGCATGGGGGTAGAAACCGATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACGGGGCTAAATCCGATCTAGTTTGTACTTTTCTCTCAACTGGTCCTCAGGTACCTTTGAGATCTTCTAAACAACCTGACACGATACCGATATCCGAGACACCAGTACAAGCAACTGTTCGAGGTGGAGATACACCAGCTATATCTTCTGTAAAACCAAGCACTTCAAACAGCCTTCCTGCGTATTCAGAAATCAGGGACAATACGGTTGGACAGTGCAAAATGATGAACTTTGATTTGAACGATGTTTATGTCGACTCGGACGATGGCATGGAAGACATTGAGAGACAAGCACACCCAGTAGTGCATATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGGATCATTTTGAAATTGTTCGGGAAAGCACCAAATGATTTTCCTCACGTTTTACGAGCTCAGGTTCTCAATTGGTTATCACATAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACTGAGGCTGAATGGAACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACAAAGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTCGTAGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTCGTATCACAAGCGTAAACCCCGTTGCCGTTCCTTTATCTAAGAAGGCTATATTTTCGGTTAAAGGAATAAACTTGACCCGATCGACAACTAGGTTACTGTGTGCCATTGAAGGGACATATCTTACTCAGGAAGCTTCAGATGATTCAACAGAAAGTGACGATAACTCGAACGCACAAGACGACAGTCAATGCGTAACCTTTTCTTGCTCGATTCCTGTCGTCTATGGAAGGGGATTCATCGAGGCTGAAGATGATGGTTTGAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAAGAGGATGTTTGTACAGAGATCTGCACACTTCAAAGTGCATTAGAATTTACTGAAACATGTTCAAATTCTGGGGAAACTGCGGAGCTGGAAGGAAGGAGTAATGCAATGGAGTTTATCCATGAAATTGGTTGGCTGTTTCATAGAAATCACTTGAAGTCTAGATTGGCTCACTTGGATCCTAATGAAAATCTCTTTTCGCTGTCACGGTTCCAGTGGCTCGTCGAGTTCTCTATGGACCATGAGTGGTGTGCTGTGGTTAAAAAGCTCTTAGATGTTCTTCTTGATGGGACTGTGGACTTTGGAGATCACCCGTCATTGAATTTAGCATTGACCGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTCGGTCGTTGGTCGAGCTCCTTTTGGGTTACCCTTCAAAAGTGAAGGACTCATCAAGTTCTGAAGACAATGCATCCATTGATGGATCGACCGGTAGCTTCCTGTTTAGACCTGATGTCGTTGGCCTGGCCGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCATGGATGTTCTTGATGCGTTAACTAATGATCCGGGAATGGTAGGAGTTGAGGCTTGGAAGAGTGCTCGAGACGTCACAGGCTCGACACCTGAGGATTACGCTCGTTTGCGTGGCCATTACTCGTATATTCGTCTCGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAACCAGAAGCAGAACACTGATGTGATGACCTCCTCCAGGTTTGAGATTGGTAGGACAAAACTAAAGCATTCTCAGCAGGATTGCAGCCGTTGTGTTATGAAACCGAGCGGTTTCGGAATGTTGTCTAAAGCGTCTCTGGTTTACCGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTGTGTGTGTGTGTGGCGCTCTTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCGTTCCGATGGGAACTACTAGAATACGGTACTAGTTAG 3036 45.03 METGYGGEACQLYGMGSMDLRAAVGKKSLEWDLNDWKWDGDLFIARPLNLVESDHLGSQVFPIVSGIPLTGGSSNSSSSCSDEANMGIEKGKREVEKRRRDNVMEDENLNDEARSLSLKVGGNGCQIVEKEAGNWEGSSGKKTKLTGGNSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKVSNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNPDNVVNGNSPPDEQTSSYLLLTLMRILANLHSNGSNKTTDQDLLSNLIRILACQSGEHGGRNRSGILHEPQNLLNGAKSDLVCTFLSTGPQVPLRSSKQPDTIPISETPVQATVRGGDTPAISSVKPSTSNSLPAYSEIRDNTVGQCKMMNFDLNDVYVDSDDGMEDIERQAHPVVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEAEWNDLCHDLSTSLNRLLDVSDKAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAVPLSKKAIFSVKGINLTRSTTRLLCAIEGTYLTQEASDDSTESDDNSNAQDDSQCVTFSCSIPVVYGRGFIEAEDDGLSSSSFPFIVAEEDVCTEICTLQSALEFTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNHLKSRLAHLDPNENLFSLSRFQWLVEFSMDHEWCAVVKKLLDVLLDGTVDFGDHPSLNLALTEMSLLHRAVRKNSRSLVELLLGYPSKVKDSSSSEDNASIDGSTGSFLFRPDVVGLAGLTPLHIAAGKDDSMDVLDALTNDPGMVGVEAWKSARDVTGSTPEDYARLRGHYSYIRLVQRKINKRSSAGHVVLDIPSTLSDGSWNQKQNTDVMTSSRFEIGRTKLKHSQQDCSRCVMKPSGFGMLSKASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLEYGTS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1239826 1245272 + CmaCh01G002620.1 Cma01g00262 285955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00262 1011 MobiDBLite consensus disorder prediction 344 364 - -
Cma01g00262 1011 SUPERFAMILY Ankyrin repeat 778 892 IPR036770 -
Cma01g00262 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1010 IPR044817 GO:0003677
Cma01g00262 1011 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Cma01g00262 1011 Pfam SBP domain 155 228 IPR004333 GO:0003677
Cma01g00262 1011 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Cma01g00262 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1010 - -
Cma01g00262 1011 Gene3D - 715 899 IPR036770 -
Cma01g00262 1011 MobiDBLite consensus disorder prediction 219 243 - -
Cma01g00262 1011 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Cma01g00262 1011 MobiDBLite consensus disorder prediction 416 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00262 - - - csv:101203103 1715.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00262 Cma14g00958 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00262 Cma-Chr1:1239826 Cma09g00010 Cma-Chr9:66151 7.24E-37 dispersed
Cma01g00262 Cma-Chr1:1239826 Cma14g00958 Cma-Chr14:4968536 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50670 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50670 60.8 9.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34235 PF03110 SBP 2.60E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00262 Cma_Chr01 FPKM 48.339012 52.209564 32.478661 31.633913 46.276405 47.244907 45.877083 43.170841 42.057487 43.235775