Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00262 ATGGAGACTGGTTATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTATGGATTTGAGGGCTGCTGTTGGGAAGAAGAGCCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTATTGCTAGGCCTTTAAATTTGGTGGAGTCTGATCATTTAGGTAGCCAAGTTTTTCCAATTGTCTCTGGGATTCCCTTGACCGGTGGCTCGTCGAACAGTTCGTCGTCGTGTTCTGATGAAGCTAATATGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGATAATGTTATGGAAGATGAGAATCTTAATGATGAAGCTCGTAGTTTGAGTTTGAAGGTTGGTGGAAATGGTTGTCAAATTGTTGAGAAAGAAGCAGGGAATTGGGAAGGAAGTAGTGGCAAGAAGACTAAACTGACCGGGGGAAACTCGAGTCGTGCGGTTTGCCAGGTAGAGGACTGTGGAGCTGATCTTAGCAATGCTAAAGATTATCACAGAAGACATAAAGTCTGCGAAATGCATTCGAAGGTGAGTAATGCGCTCGTTGCTAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAGGAGTTCGATGAAGGAAAACGGAGTTGTCGAAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAGAACAATCCTGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTCTAATGCGAATACTCGCAAATTTGCACTCCAATGGATCAAATAAGACCACAGACCAAGATCTTCTTTCGAATCTTATACGGATCCTTGCCTGTCAATCCGGTGAGCATGGGGGTAGAAACCGATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACGGGGCTAAATCCGATCTAGTTTGTACTTTTCTCTCAACTGGTCCTCAGGTACCTTTGAGATCTTCTAAACAACCTGACACGATACCGATATCCGAGACACCAGTACAAGCAACTGTTCGAGGTGGAGATACACCAGCTATATCTTCTGTAAAACCAAGCACTTCAAACAGCCTTCCTGCGTATTCAGAAATCAGGGACAATACGGTTGGACAGTGCAAAATGATGAACTTTGATTTGAACGATGTTTATGTCGACTCGGACGATGGCATGGAAGACATTGAGAGACAAGCACACCCAGTAGTGCATATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGGATCATTTTGAAATTGTTCGGGAAAGCACCAAATGATTTTCCTCACGTTTTACGAGCTCAGGTTCTCAATTGGTTATCACATAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACTGAGGCTGAATGGAACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACAAAGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTCGTAGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTCGTATCACAAGCGTAAACCCCGTTGCCGTTCCTTTATCTAAGAAGGCTATATTTTCGGTTAAAGGAATAAACTTGACCCGATCGACAACTAGGTTACTGTGTGCCATTGAAGGGACATATCTTACTCAGGAAGCTTCAGATGATTCAACAGAAAGTGACGATAACTCGAACGCACAAGACGACAGTCAATGCGTAACCTTTTCTTGCTCGATTCCTGTCGTCTATGGAAGGGGATTCATCGAGGCTGAAGATGATGGTTTGAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAAGAGGATGTTTGTACAGAGATCTGCACACTTCAAAGTGCATTAGAATTTACTGAAACATGTTCAAATTCTGGGGAAACTGCGGAGCTGGAAGGAAGGAGTAATGCAATGGAGTTTATCCATGAAATTGGTTGGCTGTTTCATAGAAATCACTTGAAGTCTAGATTGGCTCACTTGGATCCTAATGAAAATCTCTTTTCGCTGTCACGGTTCCAGTGGCTCGTCGAGTTCTCTATGGACCATGAGTGGTGTGCTGTGGTTAAAAAGCTCTTAGATGTTCTTCTTGATGGGACTGTGGACTTTGGAGATCACCCGTCATTGAATTTAGCATTGACCGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTCGGTCGTTGGTCGAGCTCCTTTTGGGTTACCCTTCAAAAGTGAAGGACTCATCAAGTTCTGAAGACAATGCATCCATTGATGGATCGACCGGTAGCTTCCTGTTTAGACCTGATGTCGTTGGCCTGGCCGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCATGGATGTTCTTGATGCGTTAACTAATGATCCGGGAATGGTAGGAGTTGAGGCTTGGAAGAGTGCTCGAGACGTCACAGGCTCGACACCTGAGGATTACGCTCGTTTGCGTGGCCATTACTCGTATATTCGTCTCGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAACCAGAAGCAGAACACTGATGTGATGACCTCCTCCAGGTTTGAGATTGGTAGGACAAAACTAAAGCATTCTCAGCAGGATTGCAGCCGTTGTGTTATGAAACCGAGCGGTTTCGGAATGTTGTCTAAAGCGTCTCTGGTTTACCGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTGTGTGTGTGTGTGGCGCTCTTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCGTTCCGATGGGAACTACTAGAATACGGTACTAGTTAG 3036 45.03 METGYGGEACQLYGMGSMDLRAAVGKKSLEWDLNDWKWDGDLFIARPLNLVESDHLGSQVFPIVSGIPLTGGSSNSSSSCSDEANMGIEKGKREVEKRRRDNVMEDENLNDEARSLSLKVGGNGCQIVEKEAGNWEGSSGKKTKLTGGNSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKVSNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNPDNVVNGNSPPDEQTSSYLLLTLMRILANLHSNGSNKTTDQDLLSNLIRILACQSGEHGGRNRSGILHEPQNLLNGAKSDLVCTFLSTGPQVPLRSSKQPDTIPISETPVQATVRGGDTPAISSVKPSTSNSLPAYSEIRDNTVGQCKMMNFDLNDVYVDSDDGMEDIERQAHPVVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEAEWNDLCHDLSTSLNRLLDVSDKAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAVPLSKKAIFSVKGINLTRSTTRLLCAIEGTYLTQEASDDSTESDDNSNAQDDSQCVTFSCSIPVVYGRGFIEAEDDGLSSSSFPFIVAEEDVCTEICTLQSALEFTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNHLKSRLAHLDPNENLFSLSRFQWLVEFSMDHEWCAVVKKLLDVLLDGTVDFGDHPSLNLALTEMSLLHRAVRKNSRSLVELLLGYPSKVKDSSSSEDNASIDGSTGSFLFRPDVVGLAGLTPLHIAAGKDDSMDVLDALTNDPGMVGVEAWKSARDVTGSTPEDYARLRGHYSYIRLVQRKINKRSSAGHVVLDIPSTLSDGSWNQKQNTDVMTSSRFEIGRTKLKHSQQDCSRCVMKPSGFGMLSKASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLEYGTS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1239826 1245272 + CmaCh01G002620.1 Cma01g00262 285955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00262 1011 MobiDBLite consensus disorder prediction 344 364 - -
Cma01g00262 1011 SUPERFAMILY Ankyrin repeat 778 892 IPR036770 -
Cma01g00262 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1010 IPR044817 GO:0003677
Cma01g00262 1011 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Cma01g00262 1011 Pfam SBP domain 155 228 IPR004333 GO:0003677
Cma01g00262 1011 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Cma01g00262 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1010 - -
Cma01g00262 1011 Gene3D - 715 899 IPR036770 -
Cma01g00262 1011 MobiDBLite consensus disorder prediction 219 243 - -
Cma01g00262 1011 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Cma01g00262 1011 MobiDBLite consensus disorder prediction 416 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00262 Cma14g00958 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00262 Cma-Chr1:1239826 Cma09g00010 Cma-Chr9:66151 7.24E-37 dispersed
Cma01g00262 Cma-Chr1:1239826 Cma14g00958 Cma-Chr14:4968536 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34235 PF03110 SBP 2.60E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00262 - - csv:101203103 1715.28