Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00265 ATGGCAGCCATGGCTCTTTCATCTACCTTTACTGGAAAAGCTGTTCCTTTGAATGCACCAACTGAGCTGTTTTCTTCTGTTCGCAGCAATGGAAGAGTCTCAATGAGGAAATCTGGAAAGCCAGCTTCTTCCTCAGGCAGCCCATGGTATGGTCCCGACCGTGTTAAGTACCTCGGACCATTCTCTGGTGAGCCTCCATCTTACCTGACAGGAGAATTTCCTGGTGATTATGGTTGGGACACTGCAGGCCTATCAGCTGACCCTGAGACCTTCGCTAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTTGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCCCAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAGAGCATTCTGGCCATTTGGGCATGTCAAATAGTGCTTATGGGTGCAGTTGAAGGTTACCGTATTGCAGGAGGACCTCTTGGAGAAATTACCGATCCCATCTACCCAGGTGGCAGCTTTGATCCCCTCGGGCTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAACGGTCGTCTCGCAATGTTTTCCATGTTCGGGTTCTTTGTGCAGGCCATTGTAACAGGAAAAGGTCCTTTGGAAAACCTCGCAGATCACCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 48.87 MAAMALSSTFTGKAVPLNAPTELFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQIVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1250267 1251064 + CmaCh01G002650.1 Cma01g00265 285958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00265 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cma01g00265 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cma01g00265 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 2 265 - -
Cma01g00265 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Cma01g00265 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00265 Cma-Chr1:1250267 Cma13g00541 Cma-Chr13:5617065 1.99E-173 dispersed
Cma11g01288 Cma-Chr11:8614659 Cma01g00265 Cma-Chr1:1250267 1.99E-150 dispersed
Cma01g00265 Cma-Chr1:1250267 Cma14g00956 Cma-Chr14:4960365 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00265 K08912 - csv:101203342 520.005