Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00279 ATGGAGAAGAAGAAGGAAGAGATTATGAACTCCGGTAGCGGCGGCGGCGGCGGTGGGTATTTGCCATTTTCCGACAGTACGACAGGCAGCAGTTTATTTGATTTTTGTGATGGTGAAAAATTGTCTGTTGGGTTTATGGAGCTGCTTGGTGTTAAAAATGGTGAATTTAAGGATTATTGTTCGGAGGTTGTGAACCCTCCGGACACCCCTAATTCCTCCTCCATCTCCTCCCCCTCTACCGACGCTGCCGATCATGAGGCCGACGGTGAAAATCAGCAGCAGCAGCAGCACAAGCCCAGTAGTAATCCTTTGAAGGTGAAGAGGAGGAAGCAAAAGAGAGAGAAGGGGCAAAGATTTGCTTTCATGACCAAGAGTGAGGTCGATCATCTCGAAGATGGGTATCGATGGAGGAAGTACGGCCAAAAAGCGGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGATGCACCAATGCATCTTGTAACGTAAAGAAGAGAGTTGAACGATCTTTTGTTGATCCAACCGTCGTGGTCACCACCTACGAAGGCCAACACACTCACCCAAGTCCGATTCTCACTCGGTCCGCCCTAGCCATCGCCACTCCACCTCGGCCCTCTGTTGACATGTTAGGAGGAGGTTGTGTCGATGTTGCACCCATACCATGGCTCAAAGCTAGCAACGACACTCATGCAATATCTCATCAATACATACAAAACTCGACCTTCTTCACTCCCCAACATTCAACCGTCGATTACAACCGCAGCCTCATCGGAGCAGCGAACATGGCCGGATTTCTTCCCGAGAACAGATTGCGCAACCCAAATCCTGCTTTTCTGGCCGACCATGGGCTGCTTCAAGATGTTGTTCCTCCTCATATGCTCAAACAGGAGTAA 894 49.33 MEKKKEEIMNSGSGGGGGGYLPFSDSTTGSSLFDFCDGEKLSVGFMELLGVKNGEFKDYCSEVVNPPDTPNSSSISSPSTDAADHEADGENQQQQQHKPSSNPLKVKRRKQKREKGQRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNASCNVKKRVERSFVDPTVVVTTYEGQHTHPSPILTRSALAIATPPRPSVDMLGGGCVDVAPIPWLKASNDTHAISHQYIQNSTFFTPQHSTVDYNRSLIGAANMAGFLPENRLRNPNPAFLADHGLLQDVVPPHMLKQE 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1325486 1327427 - CmaCh01G002790.1 Cma01g00279 285972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00279 297 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00279 297 MobiDBLite consensus disorder prediction 63 118 - -
Cma01g00279 297 SUPERFAMILY WRKY DNA-binding domain 122 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00279 297 SMART WRKY_cls 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00279 297 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 60 289 - -
Cma01g00279 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 60 289 IPR044810 GO:0003700
Cma01g00279 297 Pfam WRKY DNA -binding domain 131 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00279 297 MobiDBLite consensus disorder prediction 65 81 - -
Cma01g00279 297 ProSiteProfiles WRKY domain profile. 125 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00279 297 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00279 Cma17g01021 CCT
Cma01g00279 Cma08g00480 CCT
Cma01g00279 Cma08g00480 ECH
Cma01g00279 Cma17g01021 ECH
Cma01g00279 Cma14g00940 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00279 Cma-Chr1:1325486 Cma17g00379 Cma-Chr17:2109793 1.68E-52 dispersed
Cma20g00797 Cma-Chr20:3733279 Cma01g00279 Cma-Chr1:1325486 4.45E-43 dispersed
Cma01g00279 Cma-Chr1:1325486 Cma14g00940 Cma-Chr14:4878868 1.77E-84 wgd
Cma01g00279 Cma-Chr1:1325486 Cma17g01021 Cma-Chr17:7412849 3.89E-42 wgd
Cma01g00279 Cma-Chr1:1325486 Cma08g00480 Cma-Chr8:2725379 6.89E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34237 PF03106 WRKY 5.00E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00279 - - cmo:103489912 337.035