Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00279 | ATGGAGAAGAAGAAGGAAGAGATTATGAACTCCGGTAGCGGCGGCGGCGGCGGTGGGTATTTGCCATTTTCCGACAGTACGACAGGCAGCAGTTTATTTGATTTTTGTGATGGTGAAAAATTGTCTGTTGGGTTTATGGAGCTGCTTGGTGTTAAAAATGGTGAATTTAAGGATTATTGTTCGGAGGTTGTGAACCCTCCGGACACCCCTAATTCCTCCTCCATCTCCTCCCCCTCTACCGACGCTGCCGATCATGAGGCCGACGGTGAAAATCAGCAGCAGCAGCAGCACAAGCCCAGTAGTAATCCTTTGAAGGTGAAGAGGAGGAAGCAAAAGAGAGAGAAGGGGCAAAGATTTGCTTTCATGACCAAGAGTGAGGTCGATCATCTCGAAGATGGGTATCGATGGAGGAAGTACGGCCAAAAAGCGGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGATGCACCAATGCATCTTGTAACGTAAAGAAGAGAGTTGAACGATCTTTTGTTGATCCAACCGTCGTGGTCACCACCTACGAAGGCCAACACACTCACCCAAGTCCGATTCTCACTCGGTCCGCCCTAGCCATCGCCACTCCACCTCGGCCCTCTGTTGACATGTTAGGAGGAGGTTGTGTCGATGTTGCACCCATACCATGGCTCAAAGCTAGCAACGACACTCATGCAATATCTCATCAATACATACAAAACTCGACCTTCTTCACTCCCCAACATTCAACCGTCGATTACAACCGCAGCCTCATCGGAGCAGCGAACATGGCCGGATTTCTTCCCGAGAACAGATTGCGCAACCCAAATCCTGCTTTTCTGGCCGACCATGGGCTGCTTCAAGATGTTGTTCCTCCTCATATGCTCAAACAGGAGTAA | 894 | 49.33 | MEKKKEEIMNSGSGGGGGGYLPFSDSTTGSSLFDFCDGEKLSVGFMELLGVKNGEFKDYCSEVVNPPDTPNSSSISSPSTDAADHEADGENQQQQQHKPSSNPLKVKRRKQKREKGQRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNASCNVKKRVERSFVDPTVVVTTYEGQHTHPSPILTRSALAIATPPRPSVDMLGGGCVDVAPIPWLKASNDTHAISHQYIQNSTFFTPQHSTVDYNRSLIGAANMAGFLPENRLRNPNPAFLADHGLLQDVVPPHMLKQE | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1325486 | 1327427 | - | CmaCh01G002790.1 | Cma01g00279 | 285972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00279 | 297 | Gene3D | WRKY domain | 115 | 191 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g00279 | 297 | MobiDBLite | consensus disorder prediction | 63 | 118 | - | - | |
Cma01g00279 | 297 | SUPERFAMILY | WRKY DNA-binding domain | 122 | 190 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g00279 | 297 | SMART | WRKY_cls | 130 | 189 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g00279 | 297 | PANTHER | WRKY TRANSCRIPTION FACTOR 48-RELATED | 60 | 289 | - | - | |
Cma01g00279 | 297 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 60 | 289 | IPR044810 | GO:0003700 | |
Cma01g00279 | 297 | Pfam | WRKY DNA -binding domain | 131 | 188 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g00279 | 297 | MobiDBLite | consensus disorder prediction | 65 | 81 | - | - | |
Cma01g00279 | 297 | ProSiteProfiles | WRKY domain profile. | 125 | 190 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g00279 | 297 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00279 | Cma17g01021 | CCT | |
Cma01g00279 | Cma08g00480 | CCT | |
Cma01g00279 | Cma08g00480 | ECH | |
Cma01g00279 | Cma17g01021 | ECH | |
Cma01g00279 | Cma14g00940 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00279 | Cma-Chr1:1325486 | Cma17g00379 | Cma-Chr17:2109793 | 1.68E-52 | dispersed | |
Cma20g00797 | Cma-Chr20:3733279 | Cma01g00279 | Cma-Chr1:1325486 | 4.45E-43 | dispersed | |
Cma01g00279 | Cma-Chr1:1325486 | Cma14g00940 | Cma-Chr14:4878868 | 1.77E-84 | wgd | |
Cma01g00279 | Cma-Chr1:1325486 | Cma17g01021 | Cma-Chr17:7412849 | 3.89E-42 | wgd | |
Cma01g00279 | Cma-Chr1:1325486 | Cma08g00480 | Cma-Chr8:2725379 | 6.89E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34237 | PF03106 | WRKY | 5.00E-26 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00279 | - | - | cmo:103489912 | 337.035 |