Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00283 ATGTCGGTGCCTGCGGCTTCCGTTGCTGCGGGTATATTGAAACAGGTTGCTTGCTCGTTTCCAAAACAGTTCATTTTATTGTGGTTTCTGATTCCCGTCACCAATGCCTACGTACCCGATCTATCAGCAGCACCTTTGGTTGCACCTGCTATCCATGATATGCCTTTTCCTGCCAAATTGTCTCCTCACCAACACCACCGCGGAAAAAATATGTCACCGCAGATTGTGTCAGCAGCTGGACTAGCACCGGCATCTCCTCCTTACTATGGGCCTCTTATCACTTCTGGTCACTCACCCACAAGTTCAAGTTTTTCAAAACCATTGATGAAGAGTGGATCGGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCCTTGGATTACCTCAGCCACCACTTTCTCCTAATGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGCAATGACTGCCACTGTGTCTATCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGAATCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCTTCCGAACTAGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCAAGGTTAAATATCTCAATGGACATTACTCCACATGCTGGGATCAGCTTTTCTGCGGTTGATGCATCGACGATAAACTCTTCACTTACAATGCACAAGGTTCATCTAGACCCTACACTGGTTGGTGATTACAATCTTCTCAATCTCACCTGGTTTACGCCTCCTCCCCCTTCTCAAGCTCCTACAGCTTCGGCATCACCAGTAGCAGCTCCTGTATATCATTTTCCAGCCTCAACATCACTGAGTCCTCCTAGTAAAGGACACCATTCCAATCTGACCCTTATTCTTGGGATCGGTGCTGGCTTTTTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTCTATGCACATCTCGTCGTGGGAAGACTGAAGCACCTCCTTTAGTAGCTGAAAAACCAAGGGTTGATGACAAAGTGCCTGGGGTAGGATCTTTCCCTCATCCATCAAGTATGAGATGTCTAACTTACGAGGAGCTTAAAGAAGCAACTAATAACTTCGAAGCAGAAAGCATATTGGGGGAGGGTGGTTTTGGCAGGGTTTTTAAGGGCGTCTTGAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGTGATAAGGAGTTTTTGGTTGAGGTCGAGATGCTTAGTCGGTTGCATCACCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGATTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCCAATGGAAGCTTGGAGGCCTGGCTCCATGGGCCTCTAGGTGTTAATTGTCCTTTGGAATGGGACACCAGAATGAAGATCGCACTTGATGCAGCTCGAGGACTTGCTTACCTTCATGAAGACTCACAACCGTGTGTTATCCACAGAGACTTTAAGGCATCAAATATACTGCTTGAGAACAACTTTCATGCCAAAGTTGCTGACTTTGGTCTTGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGTACATTTGGGTATGTCGCCCCTGAATATGCAATGACTGGTCATTTACTCGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTGCTCACCGGAAGAAAACCTGTAGATATGTCACAAACATCAGGGCAGGAGAACCTTGTCACATGGGCTAGGCCGATTTTGAGAGATAAGGATCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAGTATCCGATGGAAGATTTCGTGCGGGTGTGTACCATTGCTGCAGCCTGTGTCGCTTCAGAGGCTGGCCAACGCCCAACTATGGGCGAAGTTGTACAGTCTCTTAAAATGGTCCAGCGGACTACAGAATACCAAGACGCCATGGTACCATCCTCCAACAACCAAACCAATGTCAAACAGTTCTCCACAACATTCGAGTCCGATGGATCCTCGTCGATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGCGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTCCATGAGGGACGATGA 2172 45.72 MSVPAASVAAGILKQVACSFPKQFILLWFLIPVTNAYVPDLSAAPLVAPAIHDMPFPAKLSPHQHHRGKNMSPQIVSAAGLAPASPPYYGPLITSGHSPTSSSFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPLGLPQPPLSPNAADCCKPDMVLKRGSGNDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASTINSSLTMHKVHLDPTLVGDYNLLNLTWFTPPPPSQAPTASASPVAAPVYHFPASTSLSPPSKGHHSNLTLILGIGAGFFFIAILFVLIICLCTSRRGKTEAPPLVAEKPRVDDKVPGVGSFPHPSSMRCLTYEELKEATNNFEAESILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLEWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQTSGQENLVTWARPILRDKDRLEELADPRLGGKYPMEDFVRVCTIAAACVASEAGQRPTMGEVVQSLKMVQRTTEYQDAMVPSSNNQTNVKQFSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1349070 1354454 + CmaCh01G002830.1 Cma01g00283 285976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00283 723 ProSiteProfiles Protein kinase domain profile. 379 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00283 723 MobiDBLite consensus disorder prediction 99 121 - -
Cma01g00283 723 CDD STKc_IRAK 385 655 - -
Cma01g00283 723 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 43 723 - -
Cma01g00283 723 Pfam Protein kinase domain 380 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00283 723 Gene3D Transferase(Phosphotransferase) domain 1 457 682 - -
Cma01g00283 723 PANTHER OS01G0750732 PROTEIN 43 723 - -
Cma01g00283 723 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Cma01g00283 723 Gene3D Phosphorylase Kinase; domain 1 360 456 - -
Cma01g00283 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Cma01g00283 723 SUPERFAMILY Protein kinase-like (PK-like) 353 656 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00283 Cma14g00938 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00283 Cma-Chr1:1349070 Cma19g00126 Cma-Chr19:744556 1.95E-129 dispersed
Cma16g00164 Cma-Chr16:716404 Cma01g00283 Cma-Chr1:1349070 2.10E-83 dispersed
Cma01g00283 Cma-Chr1:1349070 Cma14g00938 Cma-Chr14:4862905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68251 PF00069 Pkinase 1.80E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00283 - - csv:101219278 1214.52