Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00358 ATGGCGACGAAGACCGACGGAATCCAAGAGGAAGAAATTTCAAAGCTCGAGGAAGGCACTCTCGGAACCGGCGTCGCGCGCCTCCGTCCATCGTCTTGTGTCGTTACCATCCAAAAGGTTATTGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGTGGTGAACAAAATTTACGGATCAGTGACGTTCCCCGGAATCTGCGTGGTTTGGGGATTGATTGTGATGGTTATGGTGTATTCGTTGGGACACATCTCTGGAGCGCACTTCAACCCTTCTGTTACAATCACCTTCGCCATTTTTCGTCGCTTCCCCTTTCGCCAGGTTCCAATATACATAGGAGCTCAAGTAGCAGGGTCCCTTCTTGCAAGCACCACACTGGACCTATTGTTTGAAGTGACCCCGGAAGCCTTCTTTGGGACAGTGCCGGCAGGATCCGATGTCCAATCTTTCGTCCTTGAAATCATCATCACCTTCCTCTTGCTGTTAGTCGTCTCTGGTGTCTCCACTGATCACAGAGCTGTAGGAGAATTGGCGGGAATTGTTGTTGGAATGACCGTTCTTTTGAATGTCTTCGTTGCTGGGCCCATTTCAGGAGCTTCCATGAATCCAGCTAGGACCATTGGACCTGCGATAGTGAAGGGACAGTTCAAAGGATTATGGGTTTACATGGTTGGGCCGTTGATCGGAGCTATTGCCGGAGCATTTACTTACAACCTGATGAGATTCACAGACAAGCCATTGTCGGAGATCACCAAAAGCAGCTCATTCCTCAATCGCTCCCAAAAATCATAA 810 49.63 MATKTDGIQEEEISKLEEGTLGTGVARLRPSSCVVTIQKVIAEVIGTYFVIFTGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSLGHISGAHFNPSVTITFAIFRRFPFRQVPIYIGAQVAGSLLASTTLDLLFEVTPEAFFGTVPAGSDVQSFVLEIIITFLLLLVVSGVSTDHRAVGELAGIVVGMTVLLNVFVAGPISGASMNPARTIGPAIVKGQFKGLWVYMVGPLIGAIAGAFTYNLMRFTDKPLSEITKSSSFLNRSQKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1782726 1785793 - CmaCh01G003580.1 Cma01g00358 286051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00358 269 Gene3D Glycerol uptake facilitator protein. 6 258 IPR023271 -
Cma01g00358 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cma01g00358 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PANTHER AQUAPORIN NIP2-1 30 258 IPR034294 -
Cma01g00358 269 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Cma01g00358 269 Pfam Major intrinsic protein 36 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00358 269 PANTHER AQUAPORIN NIP4-1-RELATED 30 258 - -
Cma01g00358 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00358 Cma-Chr1:1782726 Cma07g00157 Cma-Chr7:798243 2.14E-90 dispersed
Cma14g01679 Cma-Chr14:12521168 Cma01g00358 Cma-Chr1:1782726 9.23E-42 dispersed
Cma01g00358 Cma-Chr1:1782726 Cma03g01348 Cma-Chr3:8618130 1.03E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00358 K09874 - csv:101215315 435.261