Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00369 ATGTTAGGAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGTAGACGATATTTGTTGTTTTCTGCGTTCTGGTTTGATTTCAATTGCAGAAGCTACAATGTTCTTGTCATGGAGGAAAAGCAAACTTGGGTTTCTCCCCAAGTTGAAGAAAGAGCATCTTCCGGGCGTTGATTCGGGTTCCGAAATTGTGATTCCTTCGCATTTTCTATGTCCGATTTCGCTTGATTTGATGAAGGATCCTGTGATTTTGTCCACGGGGATTACTTACGATAGAGAGAGCATCGAGAAGTGGATTGAGGGTGGGAATTTTTCTTGTCCTGTGACGAAACAGGATTTGATGAGTTTTGACCTAATCCCTAATCACACCTTGAGGAGGATGATCCAAGATTGGTGCGTTGCGAATCATTCTTACGGAATTGAGCGAATTCCAACACCGCGGATTCCAGTCACGCCGTATGAAGTTAATGACGTTTGTTCGAGAATCGCCGTCGCGACTCAAAGAGGCGATTCGAAGAGATGCAGTGAATTGGTGGGTAAGATCAGGAATTGGGCGAGAGAGAGCGAGAGGAATCGGAGGTGCGTTGTGAATGGGGGAACTGGGATTGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGTATGTGTATTCCCAATCTCCATTGAAGGGTTATCCAAGCTCGGATCTGCGGATTCCTTGAAATGCTTGGTTTCCTTCTTAGTGGGGAAAAATCTTTCTCCAAAACAGAACGCAGTTTTTGTTCTGAAAGAACTGCTTCTGGTTGATCAAAGATACGTCGATTCATTGGCTGCCATTGAAGGAGTATCCGAAGCTTTAGTAAGCATCATAAGGGAGCCTCTTTGCCCTTCAGCTACAAAATCATCCCTTACAGCCATTTTCTACATGATTTTACCATCCGAAATCAGCGAGAAAATGACAATGAAATTCATGGAACTGGGTTTGGTCTCTCAGCTGCTAGATTTTCTTGTAGATGCAGAGAAAAGCCTGTGTGAGAAAGCGTTGGGAGTATTGGATGGAATCTGTGATTTTAAACAAGGAAGAGAGAAGCTATACCAAAATGCACTAACAATTCCATTGTTAGTCAAGAAGATCCTAAGAGTATCAGAGGTTGCATCTGAGTATTGTCTGTCAATATTGTTGAAGCTTTGTAAAAGTGGAGAGAAGGGTGAGGATGAGGCGAGGGTGGAAGCTGCTCAACTGGGTGCTTTCCAGAAGATAATTGTTCTTTTGCAGGTTGGTTGCGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTGTTGAATCTTTACAAGGATAGGTTAGATTGTATTGATTCATCCATGCATTTTAAGTTCTTGAAGAAATCATTCTGA 1431 42.63 MLGEEEEEEEEEEEVDDICCFLRSGLISIAEATMFLSWRKSKLGFLPKLKKEHLPGVDSGSEIVIPSHFLCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMSFDLIPNHTLRRMIQDWCVANHSYGIERIPTPRIPVTPYEVNDVCSRIAVATQRGDSKRCSELVGKIRNWARESERNRRCVVNGGTGIVLAASFEHFAGVSIEKHVGLLEEILLVLVCVFPISIEGLSKLGSADSLKCLVSFLVGKNLSPKQNAVFVLKELLLVDQRYVDSLAAIEGVSEALVSIIREPLCPSATKSSLTAIFYMILPSEISEKMTMKFMELGLVSQLLDFLVDAEKSLCEKALGVLDGICDFKQGREKLYQNALTIPLLVKKILRVSEVASEYCLSILLKLCKSGEKGEDEARVEAAQLGAFQKIIVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFKFLKKSF 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1853332 1855426 + CmaCh01G003690.1 Cma01g00369 286062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00369 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 142 IPR013083 -
Cma01g00369 476 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Cma01g00369 476 SUPERFAMILY ARM repeat 250 437 IPR016024 -
Cma01g00369 476 PANTHER WDSAM1 PROTEIN 59 476 IPR045185 GO:0061630
Cma01g00369 476 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Cma01g00369 476 CDD RING-Ubox_PUB 69 111 IPR045210 -
Cma01g00369 476 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 59 476 - -
Cma01g00369 476 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Cma01g00369 476 Gene3D - 170 473 IPR011989 -
Cma01g00369 476 SUPERFAMILY RING/U-box 62 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00369 Cma-Chr1:1853332 Cma04g01036 Cma-Chr4:5373799 3.32E-129 dispersed
Cma01g00369 Cma-Chr1:1853332 Cma04g00081 Cma-Chr4:403222 1.51E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00369 - - csv:101220059 784.252