Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00377 ATGAAGCGAGATCACTCTTACCAGTCACCAAATCCGGCCGGCAAGGCCAAGATATGGCCGGAGGAGGACGACGACGAGGACGAGCTCCTAGCAGCTCTAGGCTACAATGTCCGGTTGTCGGACATGGCCGACGTCGCTCTGAAACTCAAACAGCTCGAAATGGTAATGGGTTTGTCGGAAGAAGACGGAATTTCTCATCTTTCTTCCAACACCGTCCATTACAATCCCTCCGATGTGTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAACACCGATGACTCTGTTTTCGCCGAAGCCGAATCAACCTCCGCCATCGCGGCATTCGCCGACGACTCTGAGTACGATCTCCGAGCAATTCCGGGCGTTGCTGTTTTCCCCCAAATCGATTCCAATACACCGAGGAAGCGATTTAAGAAATCAGAGTCCGAATCGGTTCTTGTTACTGCTGCTTCTTCTTCTTCATCGTCGTCGGAGCCGTCGCGCACGGTGGTTCTGACGGATTCTACCGACAATGGCGTCCATCTAGTCCATACCCTCCTCGCCTGCGCCGAGGCCATCGATATCAACAACCTAAACCTCGCCGATACATTACTGAAACACATCAGAATCCTCGTCGAGGCCCAAGGCGGCGCGATGAGGAAAGTCGCCGGTTATTTTGCACAAGCCCTTACTCACCACATTTACGGATTGCACCCACAAAAGCCCTTCGAATATACATCTTCATACACCGATCTTCTTCAAATGAATTTCTACGTGTCTTGCCCGTATATGAAATTCGCCCATTTCACGGCCAATCAAGCGATTCTCGAATCTGTTGGCACCGCCGCAACCGTCCACGTCGTTGATTTTAGCCTTCAGCAAGGCCTCCAATGGCCGGCGTTGATTCAAGCCCTCGCGCTGCGTCCCGGAGGGCCGCCAGCGTTTTATCTCACCGGAATCGGCCCCCCGCCGGGGGAAAATTCTAGCGACGGATTACAGGAAGTGGTTTTGAAATTGGCTCAATTCGCGGATACGATCGGTGTGGAATTCGAATTCCGTGGGTATTTCTGCAACGATTTAGCCGAGCTCGATCCGTCCTTACTCAATTTAGAATCAGAAACCGTCATCGTGAACTCTATTTTCGAGCTCCATCGGCTACTGGCGCATCCGGGCGCGATCGAGAAAGTTCTAAAAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCCGGTCGCTGACCACAACGGACCATCGTTCACCGGCCGATTCACAGAAGCGTTACACTATTACTCGAGCTTGTTCGATTCGTTGGAAGGGTCGCTGGCAGGGGAGGAGGATGTGGCGGGGTCGGAGGAGTATTTGGGTAGGCAAATCTTGAACGTGGTGGCGGGTGAAGGTTCCGACCGGGTCGAGCGGCACGAGACATTGGCGCAGTGGCAGAGCCGGTTGGGTTCGAGTGGGTTCGAGATGGTTCCTTTGGGTTCAAACGCGTTCAAGCAGGCGAGTACTCTGTTGGCTCTGTTCGGCGGCGGAAATGGTTACAGAGTTGAAGAGAATAATGGAAGTTTGACGTTGGGTTGGCACACTCGGCCGCTTATCGCCACCTCGGCGTGGGCTGAGTTGGCTCGGCCGAGTTTATCCAAACCGGAATCCTTTGACAAGATGTAG 1659 53.16 MKRDHSYQSPNPAGKAKIWPEEDDDEDELLAALGYNVRLSDMADVALKLKQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTDDSVFAEAESTSAIAAFADDSEYDLRAIPGVAVFPQIDSNTPRKRFKKSESESVLVTAASSSSSSSEPSRTVVLTDSTDNGVHLVHTLLACAEAIDINNLNLADTLLKHIRILVEAQGGAMRKVAGYFAQALTHHIYGLHPQKPFEYTSSYTDLLQMNFYVSCPYMKFAHFTANQAILESVGTAATVHVVDFSLQQGLQWPALIQALALRPGGPPAFYLTGIGPPPGENSSDGLQEVVLKLAQFADTIGVEFEFRGYFCNDLAELDPSLLNLESETVIVNSIFELHRLLAHPGAIEKVLKTIKELNPKIVTVVEPVADHNGPSFTGRFTEALHYYSSLFDSLEGSLAGEEDVAGSEEYLGRQILNVVAGEGSDRVERHETLAQWQSRLGSSGFEMVPLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWAELARPSLSKPESFDKM 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1893834 1895492 + CmaCh01G003770.1 Cma01g00377 286070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00377 552 Pfam Transcriptional regulator DELLA protein N terminal 27 93 IPR021914 -
Cma01g00377 552 Pfam GRAS domain family 176 535 IPR005202 -
Cma01g00377 552 PANTHER DELLA PROTEIN RGL1 23 535 IPR030006 GO:0003712|GO:0005634
Cma01g00377 552 SMART DELLA_2 27 100 - -
Cma01g00377 552 Gene3D - 25 90 IPR038088 -
Cma01g00377 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 23 535 IPR005202 -
Cma01g00377 552 MobiDBLite consensus disorder prediction 1 22 - -
Cma01g00377 552 ProSiteProfiles GRAS family profile. 167 536 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00377 Cma-Chr1:1893834 Cma15g00743 Cma-Chr15:3614862 0 dispersed
Cma01g00377 Cma-Chr1:1893834 Cma14g00820 Cma-Chr14:4141137 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34244 PF03514 GRAS 1.70E-118 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00377 K14494 - csv:101203095 805.438