Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00384 ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGTAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGAGTCCTGAATCTCAGGCTAACGCTACTGTTTTTCTTGCTAAGTTTTACGGCCGTGCTGGACTCATGAATCTTATCAACGCTGGTCCTGAGCATCTACGGCCTGCGATCTTTAGATCTCTTCTCTATGAGGCTTGTGGACGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTAGTAATTGGCATCTCTGTCAGGCGGCTGTTGAGGCGGTGCTTAAAGGCGCTCCGATTATTCCGATTAATTTTGAGGCGGCCGCGACTGGCGATGGGCCGCCGTTGAAGGCTTACGACATTCGTCATATTTCGAAGGATGAAAACTCCGCCGCCTCCAACGATGGTGGAGCGAACCGGCGAGTCAGGACTCGGTGCCGTTTTAAGCGATCGGCCGTGAAGGATAAAGAGAGTACTGGAATCGTATCTGCCGTAGCGGAGTCGACTCGGCGACTGTTCACCTCGACAGAGATTAACCGTTCGTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCAGACTCGCCGCATCTCGAACATGAGAGCAAAGAAACCGAGAGCATGATCTCGGTGGAGACGGCGGATGTTTCTCCTCTTTCGCCGTCGTCAGCTTTTTTCAGATCGGGATCCAGTCACGTACAAAGGAAGTTCACCAACCACGACGGCGGCAGGATGACAATTCCGGAAAGCGAATTAGCTCTAGAACTTACCCTGGGGATGGAGCCGGTATCACGTGCCCAACACGTGGTTCCAATGAAGAAGCGAAAGATAGAGGCCGACGGTGGGTTGAGGCCCAATAAGGAAACGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCGGAAACTAG 933 51.77 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWHLCQAAVEAVLKGAPIIPINFEAAATGDGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIVSAVAESTRRLFTSTEINRSSSGESSLSHQSDSPHLEHESKETESMISVETADVSPLSPSSAFFRSGSSHVQRKFTNHDGGRMTIPESELALELTLGMEPVSRAQHVVPMKKRKIEADGGLRPNKETCNTVLGLDFAAGN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1921974 1923412 + CmaCh01G003840.1 Cma01g00384 286077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00384 310 MobiDBLite consensus disorder prediction 201 216 - -
Cma01g00384 310 MobiDBLite consensus disorder prediction 185 200 - -
Cma01g00384 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 304 - -
Cma01g00384 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 304 - -
Cma01g00384 310 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cma01g00384 310 MobiDBLite consensus disorder prediction 185 220 - -
Cma01g00384 310 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cma01g00384 310 PIRSF AS2 1 306 IPR017414 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00384 Cma-Chr1:1921974 Cma11g00267 Cma-Chr11:1358315 1.70E-86 dispersed
Cma01g00384 Cma-Chr1:1921974 Cma14g00811 Cma-Chr14:4107612 5.05E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34246 PF03195 LOB 1.60E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00384 - - cmax:111492566 612.838