Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00388 ATGTCGGAAGAAACCATCCCGATAGATTACGTCATGGAAGCTGCCTCTGGACCTCACTTCTCCGGCCTCCGGCTCGACGGACGTCTCTCCTCCCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCATCGTTATTCTGTTTCCTCTTCCTTTGCGCAGGCCGATGCCAACACTCCTAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACTGCATCTGGGAAGACGACAGTGTGTGACATGATTATCCAGCAACTTCATGATCATAGGGTAGTGCTGGTCAATCAGGACTCGTTTTACCGCGGATTGACAGCTGAGGAACTAGAACGTGTGCACGAGTATAACTTTGATCATCCTGATTCGTTTGACACCGAACAGCTTGTGGATTGCATCGAGAAGCTAAAGAGTGGGCAATCGTACCCTGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCCAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGATCAAAGAGTCCGCAATCTGATGAACATGAAGATATTTGTTGACACAGAGCCTGATGTGAGACTTGCTCGTAGAATTAGACGCGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTCCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTTGTTCTTCCGTCAAAGAAGTATGCTGATGTGATCATACCACGTGGGGGTGAGAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACAAAATTAGGCCAGCATGACCTTTGCAAAATATACCCCAATGTTACTGTCATTCAGTCAACATTTCAGATAAGAGGTATGCATACATTAATTCGAGACCAGGACATTTCAAAGCACAATTTTGTGTTCTACTCAGATAGACTTATTCGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGGTCACTCCAACTGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCTATCATTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGAGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGATGCAGCTGATATACCAGAAATTACCCAATGATATATCAGAGCGACATGTCCTACTCCTAGATCCTGTTCTCGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTAATACAGAAGGGTGTTCCAGAATCGCACATTATATTCCTCAACTTGATCTCTGCTCCCGAGGGGATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGCTGGATTGAACGAAGAATATCGTGTCATACCTGGTATGGGTGAGTTTGGTGATCGTTACTTCGGAACTGACGACTAA 1449 44.17 MSEETIPIDYVMEAASGPHFSGLRLDGRLSSPPSSSTSSPAHRYSVSSSFAQADANTPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQSYPVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTEPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGENHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDQDISKHNFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGMQLIYQKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDAGLNEEYRVIPGMGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1943052 1961256 - CmaCh01G003880.1 Cma01g00388 286081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00388 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Cma01g00388 482 CDD UMPK 63 261 IPR000764 -
Cma01g00388 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Cma01g00388 482 TIGRFAM udk: uridine kinase 60 261 IPR000764 -
Cma01g00388 482 MobiDBLite consensus disorder prediction 23 43 - -
Cma01g00388 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
Cma01g00388 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Cma01g00388 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Cma01g00388 482 MobiDBLite consensus disorder prediction 28 43 - -
Cma01g00388 482 PANTHER URIDINE KINASE 16 479 - -
Cma01g00388 482 CDD PRTases_typeI 338 453 IPR000836 -
Cma01g00388 482 Gene3D - 57 264 IPR027417 -
Cma01g00388 482 PRINTS Uridine kinase signature 61 78 - -
Cma01g00388 482 PRINTS Uridine kinase signature 91 102 - -
Cma01g00388 482 PRINTS Uridine kinase signature 136 151 - -
Cma01g00388 482 PRINTS Uridine kinase signature 193 203 - -
Cma01g00388 482 PRINTS Uridine kinase signature 207 218 - -
Cma01g00388 482 PRINTS Uridine kinase signature 229 242 - -
Cma01g00388 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Cma01g00388 482 Gene3D - 265 480 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00388 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 906.746
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00388 Cma-Chr1:1943052 Cma09g01034 Cma-Chr9:5330654 0 dispersed
Cma02g00913 Cma-Chr2:5443445 Cma01g00388 Cma-Chr1:1943052 1.34E-07 dispersed
Cma01g00388 Cma-Chr1:1943052 Cma11g01493 Cma-Chr11:9822021 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma20g00802 CST 76 562 PRT Gene Family AT2G16570 83.4 8.2e-240 827.0
Cma02g00358 CST 68 554 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cma02g00358 CST 70 554 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cma20g00802 CST 82 562 PRT Gene Family AT4G34740 85.1 9.6e-241 830.1
Cma20g00802 CST 60 535 PRT Gene Family AT4G38880 72.7 2.5e-198 689.1
Cma02g00358 CST 26 527 PRT Gene Family AT4G38880 68.3 5.8e-195 677.9
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma15g01143 . 5 97 PRT Gene Family AT4G22570 86.0 2.0e-43 172.2
Cma16g01064 . 5 97 PRT Gene Family AT4G22570 86.0 3.5e-43 171.4
Cma06g00768 . 5 104 PRT Gene Family AT4G22570 78.0 6.6e-42 167.2
Cma05g00145 CST 5 97 PRT Gene Family AT4G22570 80.6 4.0e-39 157.9
Cma12g00594 CST 81 171 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cma12g00344 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cma15g01143 . 1 96 PRT Gene Family AT4G12440 83.3 2.5e-40 161.8
Cma06g00768 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cma16g01064 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cma12g00594 CST 75 170 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cma05g00145 CST 1 96 PRT Gene Family AT4G12440 78.1 3.4e-37 151.4
Cma12g00344 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma04g02471 . 1 184 PRT Gene Family AT1G71750 65.1 1.2e-68 256.9
Cma09g01034 . 60 512 PRT Gene Family AT1G55810 85.2 2.9e-224 775.0
Cma01g00388 . 19 482 PRT Gene Family AT1G55810 73.8 1.1e-199 693.3
Cma11g01493 . 550 964 PRT Gene Family AT1G55810 79.2 5.4e-194 674.5
Cma09g01034 . 109 511 PRT Gene Family AT3G27440 76.9 1.6e-184 642.9
Cma01g00388 . 80 482 PRT Gene Family AT3G27440 74.4 1.9e-177 619.4
Cma11g01493 . 565 964 PRT Gene Family AT3G27440 74.7 2.5e-177 619.0
Cma01g00388 . 1 482 PRT Gene Family AT3G27190 85.7 2.1e-244 842.0
Cma11g01493 . 550 964 PRT Gene Family AT3G27190 88.5 3.8e-222 768.1
Cma09g01034 . 47 511 PRT Gene Family AT3G27190 72.7 4.7e-204 708.0
Cma03g00404 . 4 286 PRT Gene Family AT3G53900 67.7 6.0e-109 391.3
Cma09g01034 . 45 512 PRT Gene Family AT4G26510 83.2 2.8e-230 795.0
Cma01g00388 . 11 482 PRT Gene Family AT4G26510 75.0 3.3e-210 728.4
Cma11g01493 . 550 964 PRT Gene Family AT4G26510 81.3 3.0e-203 705.3
Cma01g00388 . 1 482 PRT Gene Family AT5G40870 85.7 4.0e-243 837.8
Cma11g01493 . 550 964 PRT Gene Family AT5G40870 90.4 1.7e-225 779.2
Cma09g01034 . 88 514 PRT Gene Family AT5G40870 78.7 1.1e-203 706.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00388 Cma_Chr01 FPKM 5.875445 6.230433 5.746726 5.648166 2.008298 3.172544 2.790607 3.958306 3.429322 4.200293