Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00390 ATGGTTCAGCCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGATGACGATGATGGGGATCTTGATTTTCTTCTTCCTCCCAAGCAAGTTATTGGGCCGGACGAAAATGGGTTGAAGAAAACTATTGAGTATCAGTTTAACGAAGATGGCAACAAGGTCAAAATCACGACGACCTCTCGAACGCGCAAGCTTGCCAATGCTCGTCTGAGTAAACATGCCATAGAGCGCCGATCTTGGGCCAAGTTCGGGGATGCTGTACATGAAGACGTCGGAAGTAGGCTCACTATGGTCTCCACCGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGAGCTGTTCTTATGGTCTGCCGAACTTGTGGTAAAAAGGGTGATCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCATCACAAGCTGATGGATTGGATAAGACTGTTGCACCAGAGGCTACAACTGCTGCTCCTGGTGCAACGAAGGGAGCGTACGTACCTCCAGGTATGAGAGCAGGGGCAGAGAGGACTGGAACTGACATGAGACGTAGAAATGATGAGAACTCTGTTCGTGTGACCAACCTTTCAGAGGATACTAGAGAGCCTGACTTACTTGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTCGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAACCGTGAGGATGCACAAAGAGCAATTAACAAACTCAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCGACTTAA 867 48.56 MVQPTNPSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKKTIEYQFNEDGNKVKITTTSRTRKLANARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLASQADGLDKTVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1965123 1968159 + CmaCh01G003900.1 Cma01g00390 286083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00390 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Cma01g00390 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cma01g00390 288 Gene3D - 170 288 IPR012677 -
Cma01g00390 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cma01g00390 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cma01g00390 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cma01g00390 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cma01g00390 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Cma01g00390 288 CDD eIF3G 37 156 IPR024675 -
Cma01g00390 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cma01g00390 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Cma01g00390 288 Pfam Eukaryotic translation initiation factor 3 subunit G 30 157 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00390 Cma-Chr1:1965123 Cma08g00812 Cma-Chr8:4907050 1.02E-11 dispersed
Cma13g01103 Cma-Chr13:8280929 Cma01g00390 Cma-Chr1:1965123 0 transposed
Cma01g00390 Cma-Chr1:1965123 Cma14g00804 Cma-Chr14:4068116 0 wgd
Cma01g00390 Cma-Chr1:1965123 Cma14g01201 Cma-Chr14:9598250 1.60E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00390 K03248 - csv:101207022 544.658