Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00392 ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGACTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGTTACATCGATCCTAATCTTGTAGTTGAGACAATGTCTTCCAGCAGTTCATCATTTCAGCCAGGGAGGCAATCAGCACCTTCACCTCCTACAAATGATCAAACTCAGTCACAGAGCTCCGGGTCAACTACAAGAAATTCAGGAACATCGGCAACTACAGATTCAAATTGGCTGTTTTTACGCTGGGATCGACATAGGGTTCTTTTTTTGGTCAATGCTTGGGTGTTTCTCTTGACATCGTTTGCAATGATACCAATGGTTCCCAGAAACATTTCACATAGGGCGTATCAGATTTCTCTTATGGGCACTGCATGCTCCTCTCTATTCACCTTGTTCATTACTTGTGGGACACCCAGGTCGTTCGATATGCAGGCTTTGGAAGTTTACTTCCAACCTGTCGTTGCAACAAAAGCTCTCGTCTACCTTATTTACTCCATTACCTTTGTAGCTTCAAATCTTTTCCTTAAACTTGCTTTAATTCCAATTATATGCGTAGCTGTTGAGCAGATTGCCAAGTTCGTTCGGCATAATTTCCCCCGATCCGCCTTCTACAGGAAATGCTTGGAGCGGCCTTGTGCTTGGGCGGAATCAAATACAACCACACTTTGTCTTCTGTCTTCAAATGTTGAGATTGCACTGGGTTTCCTTCTGATCATCTCCTTATTCACATGGCAGCGAAACTTCGTGCAAACATTCATGTACTGGCAGCTACTGAAGCTGATGTATCACTTCCCCATGACTGCTGGGTATCATCAAAGTGCGTGGGCTAAGATTGGGAGAAAAGTTAATCCATTTGTGAGCAGATTTCTCCCATTTTTGAAGCCTTTACTTTCTGCAGCTCAAAGATGGTGGATCAGAATCGGCTTCGATCCCTTCGCTTCTCATCTCCTACGGCCGTCCATGGCGGCTACGGCTGACCGGCTCCGCCCTGTCGTGACGTTTGCCGGCCAGGGGATTCGGTTTGATCAGGATTCGGCGGAGACTCCCCCTCTGCTCTCTAGGATGTTGTCTTATCCGATTGGGATTATTCACCACCAGTTGAGCCGCCGTCTTGGTGCCGGGAAGCCACAACCACCGCGGCGTCAGCAGTCTTTTAGTCGAGATTTTGGTCATGCTGCTGCGGAGACCGTTCTTGTTACTCGGTTGAGCTTCACTCTCCTTCGATCTCTTGGGGTAGGGTACCGGTGGATCGTAAGATTAACTGCACTTGCAGTGTATGCCATTCTTCTTATGCCCGGTTTTCTTCAAGTTATGTATGATTATTTCTTCTCAAGTCAGATTCGGAGGAATATTATTTATGGAAATCAACCAAGAAATTGCTTGGATTTGTATTTACCTACAAATACTGATGAAAAAAAACCAGTTGTGATATTTGTTAGTGGCGGAGCTTGGATTATTGGGAATAAAGCATGGGGAGCTCTTTTAGGAATGCAGTTGGCAGAGAGAGATGTCATTGTAGCCTCAATTGACTATAGAAATTTCCCGCAGGGTACCATTAGTGACATGGTGACAGATGTCTCTCAAGGGATCTCATTTGTCTGCAAGAATATAGCAGACTATGGAGGAGATCCGGACAGAATCTTTCTAATGGGACAATCAGCTGGTGCACATATTTCCGTTTGTGCCCTCTTGGAGCAAGCAATCAAAGAAGCTGGAAAAGGAGAGAGCGTAGATTGGAGTGTTTCCCAAATGAAAGCTTATTTTGGTTTATCTGGAGGTTATAACTTGTCAAAACTAGTTGAGCACTTCGATAGTCGGGGTCTATATCGTTCTCTCTTTTTGAGCATAATGGAAGGTGAAGAATCTTTGGCCCAATTTTCCCCTGAAATAAGAATCCAAGATCCTAGCATCAGAGATGCTGTATCCAGCTTACCTCCTTTCGTTCTTTTTCATGGTACTGGTGATTACTCAATCCCATCGGATGCCAGTGTAACTTTTGTGGAGACACTCCGAAAAGTAGGGGCACAAGCTAACTTATTTCTCTACGAGGGAAAAACTCATACAGATTTGTTCCTTCAGGATCCTTTTCGTGGAGGCAGTTATGAACTTTTTGATCAATTAGTTGCCATATTACATGCTGGCGACGAGGAAGCTCTTGCAAAGGATTCCATGGCACCGCCAAAACCGCGTCTTGTTCCAGAGATTTTGATAGGATTGGCACGAATGTCTGCAATTGTAGTTGCAGCAGAGCATTCAAAACTTTTATTCCTTTCATTGTGTAGCATTATTGTTATCTGTAGTGCTCTTGTTGGTTTAGAAGTAGCAAGCCTAAGATTACCCATTGATTATGTTCGGGCGGCGGGTATGGGGTCACAGGGGTGGGTCTGGTCTGGTCTGGGTGTGGGGGCCTGGTGGTTTCAAGTTGCAGCCTTCGGGAATGGATCGATTCCAGACGTAAGGCAGCAGACTTCTCAGATTGTGAGTCAAATCGTCGGATGTCGACGGCCGGCAGACTGGTTTATTAAAATAGGATTTGCCGATTTGGGAGGGAGGAACTCGAACTAG 2673 45.68 MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYIDPNLVVETMSSSSSSFQPGRQSAPSPPTNDQTQSQSSGSTTRNSGTSATTDSNWLFLRWDRHRVLFLVNAWVFLLTSFAMIPMVPRNISHRAYQISLMGTACSSLFTLFITCGTPRSFDMQALEVYFQPVVATKALVYLIYSITFVASNLFLKLALIPIICVAVEQIAKFVRHNFPRSAFYRKCLERPCAWAESNTTTLCLLSSNVEIALGFLLIISLFTWQRNFVQTFMYWQLLKLMYHFPMTAGYHQSAWAKIGRKVNPFVSRFLPFLKPLLSAAQRWWIRIGFDPFASHLLRPSMAATADRLRPVVTFAGQGIRFDQDSAETPPLLSRMLSYPIGIIHHQLSRRLGAGKPQPPRRQQSFSRDFGHAAAETVLVTRLSFTLLRSLGVGYRWIVRLTALAVYAILLMPGFLQVMYDYFFSSQIRRNIIYGNQPRNCLDLYLPTNTDEKKPVVIFVSGGAWIIGNKAWGALLGMQLAERDVIVASIDYRNFPQGTISDMVTDVSQGISFVCKNIADYGGDPDRIFLMGQSAGAHISVCALLEQAIKEAGKGESVDWSVSQMKAYFGLSGGYNLSKLVEHFDSRGLYRSLFLSIMEGEESLAQFSPEIRIQDPSIRDAVSSLPPFVLFHGTGDYSIPSDASVTFVETLRKVGAQANLFLYEGKTHTDLFLQDPFRGGSYELFDQLVAILHAGDEEALAKDSMAPPKPRLVPEILIGLARMSAIVVAAEHSKLLFLSLCSIIVICSALVGLEVASLRLPIDYVRAAGMGSQGWVWSGLGVGAWWFQVAAFGNGSIPDVRQQTSQIVSQIVGCRRPADWFIKIGFADLGGRNSN 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1973492 1984080 + CmaCh01G003920.1 Cma01g00392 286085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00392 890 PANTHER ARYLACETAMIDE DEACETYLASE 347 755 - -
Cma01g00392 890 Gene3D alpha/beta hydrolase 479 730 IPR029058 -
Cma01g00392 890 Pfam Transmembrane protein 33/Nucleoporin POM33 123 299 IPR005344 GO:0016021
Cma01g00392 890 Pfam BD-FAE 497 706 - -
Cma01g00392 890 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 347 755 - -
Cma01g00392 890 SUPERFAMILY alpha/beta-Hydrolases 462 733 IPR029058 -
Cma01g00392 890 MobiDBLite consensus disorder prediction 69 107 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00392 Cma04g02840 CCT
Cma01g00392 Cma15g00197 CCT
Cma01g00392 Cma14g00800 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00392 Cma-Chr1:1973492 Cma15g00197 Cma-Chr15:957473 1.63E-146 dispersed
Cma04g01549 Cma-Chr4:7844403 Cma01g00392 Cma-Chr1:1973492 1.97E-165 transposed
Cma04g02000 Cma-Chr4:12164315 Cma01g00392 Cma-Chr1:1973492 2.65E-156 transposed
Cma01g00392 Cma-Chr1:1973492 Cma14g00800 Cma-Chr14:4052106 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00392 K15889 - csv:101206540 615.92