Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00400 ATGGATCATTCCCCAATTCCCTCCTTCCTTCTGCTCTTTTCCTTTTCCCACCTTTTCCTCGTCTTCGGGGATCCGTTTGATTCCTGCAGCAATCGCTTCAACTGCGGCAATATCACCGACGTCGGCTTCCCGTTCTGGGGCGACCAAAGGCCCGCAGATTGCGGCCATCCGACGCTGAAATTGACCTGCGAAGGAGGAAATACGACGATCGTAATAAAGGAGATCAAATACCAGATTCTAAAATTCAGCAGCGTAAACGATTCCCTAAGACTCACCATCGCCAGAGACGATTACATGGATGATCTCTGCCCTAGCAAATTCATCAACACCACAATCGATTACAATCTCTTCGATGCGATTCCTAATTATCGAAACATTACCTTGCTCTATTGCTCCACCTCTCCGGTTGCCGGGCAATTTACCTGTCCTGATTATGAATTCGGCCTCATTCAGTTGAATCCCGTCGCTTCTAGTCTCTGTAATGTGAGCGTAATCGTGCCGGTTTCCTTGGATTCTTTCCCGCAGGTGAGCGATTTGGTGAACTCTTCTGAGATATTGAAGGCCATTAAAGAGGGATTTGAGGTGAGATTGAAGAAGGATAGCAGCGGATGTGGAATTTGTGAAGAGTCCAACGGCGTTTGCGGTTACGATTGGAGTTTGAATCAGACGACTTGCTCTTGTCGCCACGGTGCTTATAATGATAACGGAGCTTGTCAAAGTACGCCGGCCGGTGGAAGTCCGGCGTCTTCTCCAGGTGGGAGTGATGACTCTAACAGCACATTCCTGATTATAGGCCTTTCTGTTGGAGGGGCAGCTGTATTAGGCCTATGCCTAGGATGCTGTGTCTTCTGCATTAAACAACTAAACAAAACACATGTCCTGAAGAAGTTGAAAACCCAAGATCTTCCTTCGCCTCCTTCAAGCGCAGGCATTCTGACTCCCTCCACGTTTCCCTCTTATAGTACTCTTTCTTATCCTTATGCTAGATCTGATCATGGGAATGGGAGCTCCTACTTTGGAGCTCAGCTCTTCACCTATGCCGAACTTGAGGAAGCAACTCATAATTTTGACCCTTCTAGGGAGCTTGGAGATGGAGGCTATGGCACTGTTTACTCTGGAACACTTAAGGATGGACGGATCGTTGCGGTGAAGTGCCTATACGAAAACAATAGTAAACGAGTCGAGCAGTTCATGAATGAAATCGAGATTCTATCACAATTGCAACACCCGAACCTCGTGAAGCTATACGGATGCACGTCGAGACATAGTCAGGAACTTATCCTAGTATATGAATACATTCCTAACGGAACAGTGGCTGACCATCTACATGGAAAACGAGCAAATTCAGGTCTGCTCAGTTGGTCAGTTCGGCTGAAGATTGCTATAGAGACTGCCAATGCACTAGCTTACCTCCACCGCAAAGACATCATTCATCGCGACGTCAAAACCAACAACATTCTCCTAGACAACAACTTCAAAGTAAAAGTGGCGGATTTCGGCCTCTCACGGTTATTCCCCCTTCATGTCACTCATGTTTCAACTGCTCCACAAGGAACACCCGGCTACGTTGATCCTGAGTATTACCAATGCTACCAAGTTACAGACAAGAGCGACGTGTATAGCTTTGGAGTCGTTTTGATCGAGCTTATATCGTCGTTGCAAGCAGTCGACACCAACAGGAATAGAAACGACATCAATTTGGCGAACATGGGCATAGATAGAATCAAAAAATATGCTTTACATGATTTGGTAGATCCAGAGCTTGGGTTTGAGAGGGATTATGCAGTAAGGTGTATGATAACATCAGTGGCAGAGTTGGCACTGCAATGTCTTCAACAATCAAGGGATGTGCGGCCTTCCATGGACGAAGTACTGGAAGTTCTAAGAGAAATAGAGCGTGAAGAAATGGCTGCTCGCAAAGCAGAGGTGTTGGATATAGGGTCTGATAATGTGCGGCTTTTAAGGAATGCATCATCTCTGCTTTCGCCAGATTCTGGAGCAGTAACAGATAAATGGATGAAGGGTTTGAACAGAACAGCTTAA 2043 46.26 MDHSPIPSFLLLFSFSHLFLVFGDPFDSCSNRFNCGNITDVGFPFWGDQRPADCGHPTLKLTCEGGNTTIVIKEIKYQILKFSSVNDSLRLTIARDDYMDDLCPSKFINTTIDYNLFDAIPNYRNITLLYCSTSPVAGQFTCPDYEFGLIQLNPVASSLCNVSVIVPVSLDSFPQVSDLVNSSEILKAIKEGFEVRLKKDSSGCGICEESNGVCGYDWSLNQTTCSCRHGAYNDNGACQSTPAGGSPASSPGGSDDSNSTFLIIGLSVGGAAVLGLCLGCCVFCIKQLNKTHVLKKLKTQDLPSPPSSAGILTPSTFPSYSTLSYPYARSDHGNGSSYFGAQLFTYAELEEATHNFDPSRELGDGGYGTVYSGTLKDGRIVAVKCLYENNSKRVEQFMNEIEILSQLQHPNLVKLYGCTSRHSQELILVYEYIPNGTVADHLHGKRANSGLLSWSVRLKIAIETANALAYLHRKDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPLHVTHVSTAPQGTPGYVDPEYYQCYQVTDKSDVYSFGVVLIELISSLQAVDTNRNRNDINLANMGIDRIKKYALHDLVDPELGFERDYAVRCMITSVAELALQCLQQSRDVRPSMDEVLEVLREIEREEMAARKAEVLDIGSDNVRLLRNASSLLSPDSGAVTDKWMKGLNRTA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2027839 2032452 + CmaCh01G004000.1 Cma01g00400 286093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00400 680 Pfam Protein kinase domain 359 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00400 680 Gene3D Transferase(Phosphotransferase) domain 1 433 645 - -
Cma01g00400 680 CDD STKc_IRAK 362 631 - -
Cma01g00400 680 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Cma01g00400 680 Coils Coil 621 641 - -
Cma01g00400 680 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 666 IPR044652 -
Cma01g00400 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Cma01g00400 680 Pfam Wall-associated receptor kinase C-terminal 157 229 IPR032872 -
Cma01g00400 680 Pfam Wall-associated receptor kinase galacturonan-binding 29 91 IPR025287 GO:0030247
Cma01g00400 680 SUPERFAMILY Protein kinase-like (PK-like) 336 632 IPR011009 -
Cma01g00400 680 PANTHER - 23 666 - -
Cma01g00400 680 Gene3D Phosphorylase Kinase; domain 1 330 432 - -
Cma01g00400 680 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00400 680 SMART serkin_6 356 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00400 Cma-Chr1:2027839 Cma13g01013 Cma-Chr13:7795485 9.48E-162 dispersed
Cma05g00216 Cma-Chr5:911920 Cma01g00400 Cma-Chr1:2027839 6.96E-93 dispersed
Cma14g01176 Cma-Chr14:9379243 Cma01g00400 Cma-Chr1:2027839 0 transposed
Cma15g00053 Cma-Chr15:280234 Cma01g00400 Cma-Chr1:2027839 7.34E-09 transposed
Cma15g00054 Cma-Chr15:282771 Cma01g00400 Cma-Chr1:2027839 0 transposed
Cma01g00400 Cma-Chr1:2027839 Cma10g00308 Cma-Chr10:1393265 6.66E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68252 PF00069 Pkinase 3.50E-51 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00400 - - mcha:111016973 989.178