Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00420 ATGATCATGGCTGCTCCCATTCTCAGATTACCCTTTTTCCTTCCCATTCTCGCCATTTTGCTACTCTTCTCCACCTTTCTTACTTCAACAGAAGCGTATGATCCACTTGATCCAAATGGAAACATTACTATCAAGTGGGATGTTATAAGCTGGACCGCTGATGGCTATGTTGCTGTCGTTACTATGTATAATTTCCAACAATATCGTCATATTCAAGCACCGGGATGGTCTCTGCAATGGGGATGGGTTAAGAAAGAGGTCATATGGAGCATGTTGGGAGGCCAAGCAACCGAACAAGGTGATTGTTCGAGATATAAGGGGAACATCCCTCATAGCTGCAAGAGGGATCCAACCATTGTTGATCTATTGCCCGGGACTCCGTATAACCAGCAGATTGCAAATTGCTGCAAAGGCGGAGTTCTCAACTCCTGGGTGCAAGATCCAACTACTGCAGTGAGTTCATTTCAACTCAGTGTTGGTGCTGCAGGAACCTCGAATAAAACTGTCAGATTACCAAAGAACTTCACCTTAAAAGCACCTGGGCCTGGTTATACTTGTGGACCCGCAAAGATCGTTAGACCGACCAAATTCATTTCGTCTGACAAACGGAGAGTTACACAGGCCTTGATGACATGGAATATTACATGCACATATTCACAATTTCTGGCTCAAAAAACTCCGACTTGCTGTGTTTCGCTGTCATCATTTTACAACGACACAATTGTTGCTTGCCCTAAATGCTCCTGTGGTTGTCCAAACAACTCTAACGGAGCCCAAAATTGTGTGGAGCCAAATTCTCCGCATTTAGCCTCTGTTGTTACCAATGCTAGTTCTAGCAATAACAATGTGGTACCTTCGGTTCAGTGTACAAGCCATTTGTGCCCGATCCGAGTTCACTGGCATGTGAAGATTAACTATAAGGAGTATTGGCGTGCCAAGATCACAATTACAAACTTCAATTACGCGATGAACTATACAAATTGGAACTTAGTTGCTCAACATCCCAACTTCGACAATTTAACAACGATTTTCAGCTTCAACTACATGTCGATCAATCCATATGGAACTATAAATGATACTGCAGTCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGCCCTCTTGGGAATGTGCAGACAGAGCTACTTTTCCGAAAGAATCCATCGGTTTTCACATTCGATAAAGGCTGGGCTTTCCCTCGGAGGATTTATTTCAATGGCGACAACTGCGTCATGCCGCCTCCAGATGCCTATCCCCACTCACCAAACACGGGTTTGAAGCAAGGTGTCTCGTTGTTTACTACGCTATTGTCGATTTCCTTGACTCTCCTTTCCCTTCGCCATTTATTTGCATAA 1368 44.15 MIMAAPILRLPFFLPILAILLLFSTFLTSTEAYDPLDPNGNITIKWDVISWTADGYVAVVTMYNFQQYRHIQAPGWSLQWGWVKKEVIWSMLGGQATEQGDCSRYKGNIPHSCKRDPTIVDLLPGTPYNQQIANCCKGGVLNSWVQDPTTAVSSFQLSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVRPTKFISSDKRRVTQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVACPKCSCGCPNNSNGAQNCVEPNSPHLASVVTNASSSNNNVVPSVQCTSHLCPIRVHWHVKINYKEYWRAKITITNFNYAMNYTNWNLVAQHPNFDNLTTIFSFNYMSINPYGTINDTAVLWGVKFYNDLLMQAGPLGNVQTELLFRKNPSVFTFDKGWAFPRRIYFNGDNCVMPPPDAYPHSPNTGLKQGVSLFTTLLSISLTLLSLRHLFA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2113623 2117040 + CmaCh01G004200.1 Cma01g00420 286113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00420 455 PANTHER COBRA-LIKE PROTEIN 12 448 - -
Cma01g00420 455 PIRSF COBRA 6 455 IPR006918 GO:0010215|GO:0031225
Cma01g00420 455 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215|GO:0031225
Cma01g00420 455 PANTHER PROTEIN COBRA 12 448 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00420 Cma-Chr1:2113623 Cma11g00218 Cma-Chr11:1105995 0 dispersed
Cma01g00420 Cma-Chr1:2113623 Cma01g00421 Cma-Chr1:2116647 0 tandem
Cma01g00420 Cma-Chr1:2113623 Cma10g00288 Cma-Chr10:1279530 0 wgd
Cma01g00420 Cma-Chr1:2113623 Cma13g01062 Cma-Chr13:8051454 1.41E-178 wgd
Cma01g00420 Cma-Chr1:2113623 Cma14g01158 Cma-Chr14:9168574 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00420 - - cmos:111457618 797.349