Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00421 ATGAGCTTGATTGTTTCAGCTGTTTTCCTTTTTGTCATATTTTCTCTTGGAGCTGCATACGATCCGTTGGATCCGAATGGGAACATTACGGTCAAATGGGACGTCATGTCTTGGACGCCTGATGGCTATGTGGCGGTTGTGACATTGAACAACTTCCAAATGTACCGGCACATAATGAGTCCCGGGTGGACGATGGGATGGACGTGGGCGAAAAAGGAAGTGATATGGTCGATGGTCGGGTCGCAAACGACCGAGCAAGGCGATTGCTCCAAGTTCAAAGGAAACATTCCTCACTGTTGTAAGAAAACCCCTACTGTTGTGGATTTGATGCCAGGAGTTCCTTACAATCAGCAATTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGATCAGTGTTGGCCAAGCAGGTACTTCAAATAAGACTGTCAAACTCCCCAAGAACTTCACTCTGCTTGGTCCCGGCCCCGGGTACACTTGTGGCCCTGCCAAGGTCGTGCCTTCCACCACCTTCCTCACGCCCGACCGCCGTCGCAAAACTCAAGCTCTGATGACTTGGAATGTGACCTGCACTTACTCTCAGTTTTTAGCCAGAAAAAATCCTAATTGTTGTGTTTCTTTCTCATCGTTCTACAACGATACGATCACGTCTTGTCCGTCTTGCACCTGTGGTTGCCAAAACAAGAACAGCTGCATCAAGAGTGATTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAAGAAAGATAACACCCCATTGCTACAGTGCACGCATCATATGTGCCCGGTTCGAGTTCACTGGCACGTGAAACAAAATTATAAGGAATACTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGAATGAACTATTCGCTTTGGTCTCTCGTCATCCAGCATCCAAATTTGAACAATGTAACCCAAGTTTTCAGCTTCAACTACAAACCCCTTGTCCCCTATGAATCAATCAATGACACGGGAATGTTCTACGGGACGAAGTTTTACAACGACCTTCTGATGGAAGCAGGGCCATTTGGGAATGTACAATCAGAGGTGTTGCTGCAAAAGGATCAGAACACCTTCACCTTTAAGCAGGGATGGGCATTCCCTCGGAAAGTTTACTTCAATGGCGACGAGTGCATGCTTCCACCACCGGACACATACCCGTTCCTGCCAAACACTGCCCGCAAAAGGCCCATTGCCCTCTCAACATCATTTGCTTTGCTGCTGCTCTTCCTGCTGCTAGCTATTTGCTGA 1302 47.77 MSLIVSAVFLFVIFSLGAAYDPLDPNGNITVKWDVMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKTPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQISVGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCTCGCQNKNSCIKSDSKILKLVGINTPKKDNTPLLQCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVIQHPNLNNVTQVFSFNYKPLVPYESINDTGMFYGTKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNTARKRPIALSTSFALLLLFLLLAIC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2116647 2118737 - CmaCh01G004210.1 Cma01g00421 286114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00421 433 PANTHER PROTEIN COBRA 3 429 IPR006918 GO:0010215|GO:0031225
Cma01g00421 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Cma01g00421 433 PANTHER COBRA-LIKE PROTEIN 3 429 - -
Cma01g00421 433 PIRSF COBRA 1 433 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00421 Cma-Chr1:2116647 Cma11g00220 Cma-Chr11:1109507 0 dispersed
Cma01g00420 Cma-Chr1:2113623 Cma01g00421 Cma-Chr1:2116647 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00421 - - csv:101217724 854.744