Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00423 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCTAAGAGAAGGAGTGGGCTGTTGAAGAAGGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGCACTTCCAACATGCTCAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAGAGAACTCAGAGAAATCTTCTTGGTGAGGAGTTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTCGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAGATGCTGATTGAAACCAACAGATCTCTAACATTAAAGCTAGAAGAAATCAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAGGCATGTCATATGCTCCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGATACAGTGCTGCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGA 741 44.8 MGRGRVELKRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRSLTLKLEEISSRNNIRLTWEEVDQGMSYAPQNAQTQGFFQPLDCNPTLQIGYSAAVSDQITATTAPNHAQQVNAFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2127490 2130857 + CmaCh01G004230.1 Cma01g00423 286116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00423 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cma01g00423 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma01g00423 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00423 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cma01g00423 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma01g00423 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma01g00423 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Cma01g00423 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma01g00423 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00423 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma01g00423 246 Coils Coil 121 144 - -
Cma01g00423 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cma01g00423 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma01g00423 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma01g00423 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00423 Cma14g01149 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00423 Cma-Chr1:2127490 Cma14g01149 Cma-Chr14:9050926 7.16E-173 dispersed
Cma01g00423 Cma-Chr1:2127490 Cma01g00424 Cma-Chr1:2130905 2.09E-58 tandem
Cma12g00107 Cma-Chr12:438228 Cma01g00423 Cma-Chr1:2127490 3.70E-76 transposed
Cma01g00423 Cma-Chr1:2127490 Cma13g01058 Cma-Chr13:8032668 3.73E-56 wgd
Cma01g00423 Cma-Chr1:2127490 Cma14g01148 Cma-Chr14:9009460 7.68E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34250 PF01486 K-box 2.70E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00423 K09264 - csv:101208204 444.121