Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00424 ATGGTACCAACACTTTGCAAATTTGTTAATAAGGACTTTTATTTTAGACATTATAAGAAAAAAAAAAACCCCAACATTTGGCTTGTGGACAGGAAAAGGAGTTGTGTACGGAGAAAGAACATAACATATTTACGTGTATCGAAACAACAACAATTCCCCACTTCCTCTTCTTCTTCTTCTTTTTCTCCTTTTAGGGTTTGTGTTGAAGAACCCTCCACCATGGGAAGGGGGAGAGTGCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGGTTGCTCAAAAAGGCCCATGAGATCTCTGTCCTTTGCGATGCAGATGTTGCCTTGATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAGTACTCCACTCATGCCAGCATGGAGAAGATCTTGGAAAAATATGAGAGGTGTTCTTATGCAGAGAGACCATTGGCCACAAATGCAGATTCTGATTTACAGGTAAGTTGGTGTGAGGAGTACCCAAAAATTGCAGCCAGAATGGAAATTATACAGAATAACATCAGGCGTTATTTGGGAGAAGAGCTTGAGCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAGCAACTTGATTCATCACTGAAGCGCATAAGAGCTAGAAAGAACCAACTAATGCAAGAATCTATCTCATTGCTACACAAAAAGGAAAGGGAACTGCAAGAGGAGAACAGGCAGCTTGCAAACAAGGTAAAGGAGAATGAGAAAGCTTTGGTTGAACGTGGACACTGCGAGCTCCCAAACTTGGCTCCTTATCAGCCCATTTTGGCAATGCCACCCCCAATTCCTTCTTTGTTTATTGGGCCAAGCCCACCGCTAACAGATATTACCTGCTTTGATCCGCTAGCAGATATTATTCGTTTTGAGAAAACTTGCATGATGGGAGAGGCTCAACAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACATCCAAATACCAGCCTGGATGCTTAGCAATGTGA 1014 42.7 MVPTLCKFVNKDFYFRHYKKKKNPNIWLVDRKRSCVRRKNITYLRVSKQQQFPTSSSSSSFSPFRVCVEEPSTMGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTHASMEKILEKYERCSYAERPLATNADSDLQVSWCEEYPKIAARMEIIQNNIRRYLGEELEPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISLLHKKERELQEENRQLANKVKENEKALVERGHCELPNLAPYQPILAMPPPIPSLFIGPSPPLTDITCFDPLADIIRFEKTCMMGEAQQDQMKMKQGQQAPTSKYQPGCLAM 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2130905 2138191 + CmaCh01G004240.1 Cma01g00424 286117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00424 337 ProSitePatterns MADS-box domain signature. 76 130 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 83 130 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 Gene3D - 86 158 IPR036879 GO:0003677|GO:0046983
Cma01g00424 337 PANTHER BNAA09G02740D PROTEIN 74 276 - -
Cma01g00424 337 PRINTS MADS domain signature 96 111 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 PRINTS MADS domain signature 76 96 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 PRINTS MADS domain signature 111 132 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 74 276 - -
Cma01g00424 337 Pfam K-box region 160 246 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00424 337 ProSiteProfiles MADS-box domain profile. 74 134 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 SMART madsneu2 74 133 IPR002100 GO:0003677|GO:0046983
Cma01g00424 337 SUPERFAMILY SRF-like 75 154 IPR036879 GO:0003677|GO:0046983
Cma01g00424 337 ProSiteProfiles K-box domain profile. 162 252 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00424 337 CDD MADS_MEF2_like 75 149 IPR033896 GO:0000977|GO:0045944
Cma01g00424 337 Coils Coil 196 255 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00424 Cma14g01148 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00424 Cma-Chr1:2130905 Cma14g01148 Cma-Chr14:9009460 1.44E-128 dispersed
Cma03g01493 Cma-Chr3:9300438 Cma01g00424 Cma-Chr1:2130905 2.24E-41 dispersed
Cma07g00020 Cma-Chr7:140465 Cma01g00424 Cma-Chr1:2130905 4.25E-43 dispersed
Cma01g00423 Cma-Chr1:2127490 Cma01g00424 Cma-Chr1:2130905 2.09E-58 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34251 PF01486 K-box 3.50E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00424 K09264 - csv:101218674 335.109