Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00442 ATGTCGACTGTTGATTCTTCACGGGAGGAAAATGTTTACTTGGCCAAGTTGGCCGAACAGGCTGAACGGTATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAAACTGTGGATGTGGAGGAGCTGACTGTTGAGGAGAGGAATCTTCTCTCTGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCCTCTTGGAGGATAATATCTTCCATTGAGCAGAAGGAAGAAAGTCGCGGAAATGAGGACCATGTTGCAATTATCAAGGAGTACCGTGGCAAAATCGAAACTGAATTGAGCAAGATCTGTGATGGGATCTTGAGCCTACTTGAGTCTCATCTCATCCCATCAGCCTCGTCTGCCGAGTCAAAGGTGTTTTATCTCAAAATGAAAGGTGACTACCACAGGTATCTGGCTGAGTTTAAGACTGGAGCTGAAAGGAAAGAAGCAGCTGAGAGCACATTATTAGCTTACAAGTCTGCTCAGGATATTGCTCTTGCTGAATTGGCTCCTACACATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCCGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGCGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCGATTTCTGAGCTTGACACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACCCTTTGGACCTCTGATGTTGGGGATGAAGCCGGCGATGAAATTAAGGAAGCATCAAAACGTGAATCAGGAGAGGGACATGGACAGTATGTTGTTAGTGCTACTTGGGTTGTTGGTAGTTTCTGA 828 45.53 MSTVDSSREENVYLAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDVGDEAGDEIKEASKRESGEGHGQYVVSATWVVGSF 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2223792 2226079 + CmaCh01G004420.1 Cma01g00442 286135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00442 275 SMART 1433_4 8 251 IPR023410 -
Cma01g00442 275 PANTHER 14-3-3 PROTEIN 5 257 IPR000308 -
Cma01g00442 275 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cma01g00442 275 Pfam 14-3-3 protein 14 238 IPR023410 -
Cma01g00442 275 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cma01g00442 275 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Cma01g00442 275 Gene3D - 1 251 IPR036815 -
Cma01g00442 275 Coils Coil 14 34 - -
Cma01g00442 275 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cma01g00442 275 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cma01g00442 275 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cma01g00442 275 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cma01g00442 275 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cma01g00442 275 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cma01g00442 275 PANTHER 14-3-3-LIKE PROTEIN GF14-F 5 257 - -
Cma01g00442 275 PIRSF 14-3-3 2 250 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00442 Cma-Chr1:2223792 Cma12g00167 Cma-Chr12:742588 6.93E-162 dispersed
Cma19g01027 Cma-Chr19:8778030 Cma01g00442 Cma-Chr1:2223792 2.46E-116 dispersed
Cma01g00442 Cma-Chr1:2223792 Cma14g01134 Cma-Chr14:8781087 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00442 K06630 - csv:101222068 503.056