Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00445 ATGCTTATTTCCAAGCTCGTTTTGCTTTTCTGCTTCGTTATTTTATTTCAGACTGAAGTTATTTTGGGCGATTCAGATAAATCGGTGCTTCTTCAGTTCAAAAATGCTGTTTCTGATCCATCGGGGTTGCTTGCGAGTTGGACTGCGAGTGGGTCTGATTGCTGTTTCTGGTTTGGCGTTTCTTGCGACTTGAATTCTCGGGTTGTGTCACTCAACATTTCCGGGAATGGCGGTGTAGGTCATTTGTGCTCTGATTCTTCTAAATTTCCTCTTTATGGGCTTGGAATTAGGAGGAGTTGTATGGGTTTTAGAGGCTCACTGATTGGGAAGATTCCGCCGGTGATCGGGAAGCTCACCGAGCTTAGGTCCTTGTCGCTTCCGTTTAATGGTTTTGAAGGCGAAATTCCTCCTGAAATTTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTAACTGGGGTGCTTCCTGATGGTTTCCATAGACTGGGCAAGTTGCGGGTTCTTAATCTTGGATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTGCGAGTTTAGAGATCTTGAATTTAGCTGGAAATCGATTGAATGGGATAATTCCACGGTTTGTTGGTCGATTGAGAGGGCTCTACTTGTCTTTTAATCTTTTTTCAGGAACCATTCCGAGTGAGCTTGGAAATAACTGTGGAAAGCTTGAGCATCTCGACCTCTCTGGTAATTATTTGGTCAGTGGGATTCCAAGCAATTTGGGAAATTGCAATCAGTTGAAGACACTGTTGCTGTATTCTAATACGTTGGAGGAGGCCATTCCAGCTGACATTGCTAAGTTACAGAAACTAGAAGTGCTTGATCTTTCAAGGAATAGCCTCAGTGGTCCGATACCGTCTCAGCTGGGAAACTGCCTGCAGTTGTCTGTCCTTGTGCTCTCGAATCTCTTCGATCCAAAGATCAATTACACAGACGAAGACGAACTTAGTGATGATGGTTTTAACTATTTTGCAGGTGGTATACCTGAGTCTATAACAACCCTTCCAAAGCTGAAGATACTGTGGGCTCCTAATTCAAACCTCGAAGGCAGATTCCCTTCCAAATGGGGTAAGTGTGAAAGCTTGGAGATGATTAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCTAGTGAGCTTAGCGTCTGCAAAAAGCTCCTAGTCCTTGATTTAAGCTCCAACCGGCTTTCTGGTGAGCTTGATAAAAACCTTCCAGTTCCTTATATGTCTCTGTTTGATCTTAGTGGTAACCACTTTATTGGAGACATTCCTGTGTTCTGTGGCAATGATAGCTCGCCAAGCTCGCCACCGATGTTCTTTTCAAGGGGATATTTGGATCTTGATGATCCATCGTCTCGATACCTTGCATTTTTTACCACTAGTATTCGAGGTGCAACCCCTTTTGAATTTCTTGGAGATGATGACCTGATAGTACATAACTTAGGGGAGAATAACTTTACAGGAAATCTTCTGTCGTTTCCGATTCCACGTGAAAGACTGGGTAAGAAAACTGTTTATGCTTATCTTGTGGGTGGAAATAAGCTCACCGGGCCATTCCCTGATAGTATATTTGAGAAATGTGAGGATATGGGAGGACTGATCTTCAATGTTAGCAATAACAAGATATCTGGTCCATTTTCTAAGTCAATTGGTAAAAACTGTGGTTCTCTCAAGTTCTTGGATGCATCTGGTAATCAGATGACTGGCGAGGTACCTCCCAGCTTTGGAGATCTATTAGCTCTGAATCACCTGAACCTGAGTTGGAACAAGTTTCAGTATCACATACCGGCCTCTCTCGGACAGATGGCTGGTTTAAAGTACCTTTGTTTGGCTGGCAATAGCTTTAATGGTTCTATACCCTCGACCTTCGGAAAGTTGCAGGCTTTGGAGTTGCTTGATCTTTCGTATAACGATTTTTCGGGTGGAATTCCAGTCGATCTTGTTAAATTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCCGGTTTGGCAAATGTTACTACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCCTTGCCATCGAACAACATGATTAAATGTAGTGGTGCGATTGGAAACCCGTACCTACGCTCGTGCCATATGTTTTCACTGGCAGTGCCATCGTCTGAAATGCGAGGTTCAGTTGGCGACCCAAGTAGTCTTGCAGCTTCACCGTCTGATGTTGTACCGCAGACCGGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCTGCCTCCGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTGTTTCTATATACCCGAAAGTGGAATTCGAGGTCTAAAGTTATTGGATCAATGAGAAGGGAAGTCACGGTTTTTACTGATATTGGGGTTTCTTTGACATTTGAGAATGTCGTGCGTGCCACGAATAATTTTAATACCAGTAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAAGCAGAGATTGCATCGGGAGTGCTACTTGCAATAAAACGCCTCGCTGTTGGTCGATTTCAAGGCGTCCAACAGTTCGATGCAGAGATTAAAACTCTTGGAAGGCTGCGCCACCCGAACCTCGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCTTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAGTTCATCCAGGAGAGATCTACAAGAGCAGTGGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTTGCATATCTTCATGATCAGTGTGTACCACGAGTCCTCCACCGCGACGTGAAACCGAGCAATATACTATTAGACGATGATTTCAATGCTTATCTCTCTGATTTCGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACAGGTGTGGCTGGAACATTTGGCTACGTCGCTCCCGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTACGGTAATGGCTTTAACATTGTAGCTTGGGCATGTATGCTGCTTCCACAGGGACGCGCCAAGGAATTCTTCACATCAGGGTTATGGGAGGGAGGCCCCCATGATGATCTGGTTGACGTATTACACTTAGCAGTTGTGTGTACAGTAGATTCTCTGTCGACGAGGCCGACGATGAAGCAGGTGGTACGGCGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3339 44.62 MLISKLVLLFCFVILFQTEVILGDSDKSVLLQFKNAVSDPSGLLASWTASGSDCCFWFGVSCDLNSRVVSLNISGNGGVGHLCSDSSKFPLYGLGIRRSCMGFRGSLIGKIPPVIGKLTELRSLSLPFNGFEGEIPPEIFGLENLEVLDLEGNSVTGVLPDGFHRLGKLRVLNLGFNRLTGEIPSSLSGCASLEILNLAGNRLNGIIPRFVGRLRGLYLSFNLFSGTIPSELGNNCGKLEHLDLSGNYLVSGIPSNLGNCNQLKTLLLYSNTLEEAIPADIAKLQKLEVLDLSRNSLSGPIPSQLGNCLQLSVLVLSNLFDPKINYTDEDELSDDGFNYFAGGIPESITTLPKLKILWAPNSNLEGRFPSKWGKCESLEMINLAGNYLYGELPSELSVCKKLLVLDLSSNRLSGELDKNLPVPYMSLFDLSGNHFIGDIPVFCGNDSSPSSPPMFFSRGYLDLDDPSSRYLAFFTTSIRGATPFEFLGDDDLIVHNLGENNFTGNLLSFPIPRERLGKKTVYAYLVGGNKLTGPFPDSIFEKCEDMGGLIFNVSNNKISGPFSKSIGKNCGSLKFLDASGNQMTGEVPPSFGDLLALNHLNLSWNKFQYHIPASLGQMAGLKYLCLAGNSFNGSIPSTFGKLQALELLDLSYNDFSGGIPVDLVKLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLRSCHMFSLAVPSSEMRGSVGDPSSLAASPSDVVPQTGGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVIGSMRREVTVFTDIGVSLTFENVVRATNNFNTSNCIGSGGFGATYKAEIASGVLLAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLPQGRAKEFFTSGLWEGGPHDDLVDVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2235998 2239336 - CmaCh01G004450.1 Cma01g00445 286138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00445 1112 Pfam Protein kinase domain 835 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00445 1112 SUPERFAMILY Protein kinase-like (PK-like) 817 1104 IPR011009 -
Cma01g00445 1112 Gene3D Ribonuclease Inhibitor 323 448 IPR032675 -
Cma01g00445 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 1111 - -
Cma01g00445 1112 SUPERFAMILY L domain-like 25 319 - -
Cma01g00445 1112 Gene3D Ribonuclease Inhibitor 215 320 IPR032675 -
Cma01g00445 1112 Gene3D Ribonuclease Inhibitor 466 730 IPR032675 -
Cma01g00445 1112 SUPERFAMILY L domain-like 214 711 - -
Cma01g00445 1112 CDD STKc_IRAK 839 1107 - -
Cma01g00445 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672|GO:0006468
Cma01g00445 1112 ProSitePatterns Protein kinases ATP-binding region signature. 839 861 IPR017441 GO:0005524
Cma01g00445 1112 ProSiteProfiles Protein kinase domain profile. 833 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00445 1112 SMART serkin_6 833 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00445 1112 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cma01g00445 1112 Gene3D Transferase(Phosphotransferase) domain 1 909 1109 - -
Cma01g00445 1112 Gene3D Ribonuclease Inhibitor 23 214 IPR032675 -
Cma01g00445 1112 Gene3D Phosphorylase Kinase; domain 1 795 908 - -
Cma01g00445 1112 SMART LRR_typ_2 666 689 IPR003591 -
Cma01g00445 1112 SMART LRR_typ_2 594 618 IPR003591 -
Cma01g00445 1112 SMART LRR_typ_2 284 308 IPR003591 -
Cma01g00445 1112 SMART LRR_typ_2 142 165 IPR003591 -
Cma01g00445 1112 SMART LRR_typ_2 166 190 IPR003591 -
Cma01g00445 1112 SMART LRR_typ_2 236 260 IPR003591 -
Cma01g00445 1112 SMART LRR_typ_2 211 235 IPR003591 -
Cma01g00445 1112 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515
Cma01g00445 1112 Pfam Leucine Rich Repeat 238 260 IPR001611 GO:0005515
Cma01g00445 1112 Pfam Leucine rich repeat 620 679 IPR001611 GO:0005515
Cma01g00445 1112 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Cma01g00445 1112 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 6 1111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00445 Cma-Chr1:2235998 Cma14g01866 Cma-Chr14:13232403 4.32E-147 dispersed
Cma15g00806 Cma-Chr15:4068916 Cma01g00445 Cma-Chr1:2235998 0 transposed
Cma01g00445 Cma-Chr1:2235998 Cma14g01133 Cma-Chr14:8725070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68255 PF00069 Pkinase 5.10E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00445 - - csv:101218045 1836.62