Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00472 ATGGAGCAAGGAGCTATTGAGCCAAAGGGCACGGCGGACACAGACAATTCAAGCTCATACAAAAAGATCATAATAGTTGCAGCCATTGCAGCCGGAATCCAATTCGGTTGGGCTCTCCAGCTCTCATTACTAACACCATACGTCCAACAACTCGGTGTTTCCCACACATGGTCAGCTTTCATTTGGCTCTGTGGTCCAATGTCCGGCCTAATTGTGCAGCCAACTGTCGGCTACTACAGCGATCGCTGCACCTCGAGGTTCGGTCGCCGTCGTCCCTTCATCATAGCCGGAGCTATATCCGTAGCCGCCGCAGTTTTCCTCATTGGATTTGCAGCAGACATTGGGCATTCACTCGGAGATCAACTCACCAAACCCACAAAACCAAGGGCAGTGGCTATCTTCGTGGTCGGATTTTGGGTTCTTGATGTCGCTAACAACATGTTACAAGGTCCTTGTCGAGCTTTGTTAGCTGATATGTCATGTAGCAACCAAAAGAAAATGAGGGTCGCTAATGGATTCTTCTCATTCTTTATGGGCGTAGGGAATGTCTTAGGGTATGCAGCAGGGTCCAATAGCGAACTCTATAAGCTCCTTCCATTTACTATCACTAAATCTTGTGATGCTTATTGCGCTAACCTCAAGACATGTTTTTTAATCGACATTGTGTTGCTGCTAGCCATTACAACAGCCGCCGTGTTGTTAGTGAGCGAGAGGCCTTATGAGAACGCTATTGACAACGAAACAGAGCCGTTTTTTGGGCAATTGTGTGGGGCGCTCAAGCGGCTATCAAAGCCCATGTGGGTGTTGTTGCTTGTCACAGCATTGAATTGGATTGGTTGGTTTCCTTTTATAATGTATGACACGGATTGGATGGGCGCTGAAGTGTATGGTGGCAAGCCACAGGGGAGTGAAGAACAAGAGAAGAATTATGACCTTGGTGTGCGAGCAGGGGCGCTTGGTTTGATGGTGAACTCATTTGTTCTTGGGTTTACTGCATTGGGTATTGAGCCAATTAGCCGTGTGGTTGGTGGGCTAAGATGGGTTTGGGGAATTGTGAATGTTGTATTGGCAATTTGTATGGGGTGTACGGTGGCTGTGACGAAGGCGGCTGAGAAATGGAGGGCTGTTCACGGCGGCTTGGCGCTTCCTCCGCCGGGTGTTAAAGGTGGCGCCTTTACGATCTTTGCGATATTGGGTGTTCCGCTATCGGTGACTTATAGTGTTCCATTTGCTCTTGCATCAATCTTTTCGTTGTCATCGAATGCAGGGCAAGGGCTGTCTTTGGGGATTTTGAATCTGTTTATAGTGATACCGCAGTTCTTTGTGTCGGCTGTTAGTGGGCCGCTTGATGCTGCTCTTGGAGGGGGGAATTTGCCGGCTTTTGTTATGGGGGGGATTGCTGCGGCTGTGAGTGCTGTGTGTGCTATGTTTTTGCTTCCTGATCCGCCGCCGGAGACTCATGTTGCTGTCACGATGGACGCCGGGCATTGA 1491 49.23 MEQGAIEPKGTADTDNSSSYKKIIIVAAIAAGIQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPMSGLIVQPTVGYYSDRCTSRFGRRRPFIIAGAISVAAAVFLIGFAADIGHSLGDQLTKPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCSNQKKMRVANGFFSFFMGVGNVLGYAAGSNSELYKLLPFTITKSCDAYCANLKTCFLIDIVLLLAITTAAVLLVSERPYENAIDNETEPFFGQLCGALKRLSKPMWVLLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPQGSEEQEKNYDLGVRAGALGLMVNSFVLGFTALGIEPISRVVGGLRWVWGIVNVVLAICMGCTVAVTKAAEKWRAVHGGLALPPPGVKGGAFTIFAILGVPLSVTYSVPFALASIFSLSSNAGQGLSLGILNLFIVIPQFFVSAVSGPLDAALGGGNLPAFVMGGIAAAVSAVCAMFLLPDPPPETHVAVTMDAGH 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2388595 2390085 + CmaCh01G004720.1 Cma01g00472 286165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00472 496 CDD MFS_SLC45_SUC 34 477 - -
Cma01g00472 496 Gene3D MFS general substrate transporter like domains 16 487 IPR036259 -
Cma01g00472 496 SUPERFAMILY MFS general substrate transporter 21 485 IPR036259 -
Cma01g00472 496 PANTHER SUGAR TRANSPORTER 19 489 - -
Cma01g00472 496 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 483 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cma01g00472 496 Pfam MFS/sugar transport protein 28 279 - -
Cma01g00472 496 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 19 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00472 Cma-Chr1:2388595 Cma05g00865 Cma-Chr5:6014662 0 dispersed
Cma12g00228 Cma-Chr12:1123406 Cma01g00472 Cma-Chr1:2388595 4.46E-158 transposed
Cma01g00472 Cma-Chr1:2388595 Cma05g00857 Cma-Chr5:5884668 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00472 K15378 - csv:116401998 776.548