Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00479 ATGGAGTTTCATATGCTCTTTCCGGTGGTCTTTTTCTCACTCCTTTCGTCCACCGCGGCAGTCGGCGAATGGACCAACGCCCACGCCACCTTCTACGGCGGCAGCGATGCTTCTGGGACAATGGGCGGAGCTTGTGGGTATGGGAATCTTTACAGTCAAGGGTTCGGCCCGAACACCGCCGCTGTTAGCACTGCCCTGTTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATCAAGTGCGTGGACGACCCTCAATGGTGTCTTCCAGGCTCTGTTTTGGTTACCGCCACCAATTTCTGTCCGCCCAATAACGCCCTTCCCAACACTGCCGGCGGCTGGTGCAACCCTCCTCTGCACCATTTTGACCTCGCCCAGCCTGTGTTCCTCCACATTGCCCAATACCATGCCGGAATCATCCCCGTCGCTTATCGGAGGGCTCCGTGCAAAAGAAGGGGAGGAATAAGGTTCACAATCAACGGCCATTCCTACTTCAATTTGGTGCTAATAACCAATGTGGGCGGCGCCGGAGATGTCCGGGCAGTGTCGATTAAAGGGGCGAGAAGTGGGTGGCAGTCAATGTCGAGAAATTGGGGGCAGAATTGGCAGAGCAACAACTTTTTGGATGGTCAACCCCTCTCTTTTAGGCTCACCACTAGCGACGGCCGAACACTTGTTTCTAGAAACGTGGCTCCGGCCGGTTGGTCCTTTGGCCAGACCTTCACCGGCCGTCAATTCCGGTGA 744 55.51 MEFHMLFPVVFFSLLSSTAAVGEWTNAHATFYGGSDASGTMGGACGYGNLYSQGFGPNTAAVSTALFNNGLSCGSCYEIKCVDDPQWCLPGSVLVTATNFCPPNNALPNTAGGWCNPPLHHFDLAQPVFLHIAQYHAGIIPVAYRRAPCKRRGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGARSGWQSMSRNWGQNWQSNNFLDGQPLSFRLTTSDGRTLVSRNVAPAGWSFGQTFTGRQFR 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2422883 2423972 - CmaCh01G004790.1 Cma01g00479 286172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00479 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Cma01g00479 247 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Cma01g00479 247 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Cma01g00479 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Cma01g00479 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Cma01g00479 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cma01g00479 247 SMART dpbb_1 59 144 IPR007112 -
Cma01g00479 247 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Cma01g00479 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Cma01g00479 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Cma01g00479 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Cma01g00479 247 PANTHER EXPANSIN 9 246 - -
Cma01g00479 247 Pfam Lytic transglycolase 59 144 IPR009009 -
Cma01g00479 247 SUPERFAMILY Barwin-like endoglucanases 23 172 IPR036908 -
Cma01g00479 247 Gene3D - 10 150 IPR036908 -
Cma01g00479 247 PANTHER EXPANSIN-A15 9 246 IPR002963 GO:0009664
Cma01g00479 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Cma01g00479 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Cma01g00479 247 Gene3D - 154 246 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00479 Cma-Chr1:2422883 Cma15g00164 Cma-Chr15:757817 2.81E-134 dispersed
Cma01g00793 Cma-Chr1:4282436 Cma01g00479 Cma-Chr1:2422883 5.21E-112 dispersed
Cma20g00193 Cma-Chr20:916333 Cma01g00479 Cma-Chr1:2422883 1.14E-37 dispersed
Cma01g00479 Cma-Chr1:2422883 Cma18g01138 Cma-Chr18:9207304 7.10E-71 wgd
Cma01g00479 Cma-Chr1:2422883 Cma04g01668 Cma-Chr4:8389926 3.79E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00479 - K20628 csv:101202833 446.047