Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00483 ATGCCAAGCGGAAACGAACATAAAAAAGGTGGAGAAGAGATAGATTCTCGTATTTGTTCTTCAATCCAATTCCAAATTCCCAATTCCGTAAAGGTGTCCCTTAAGGGGAGGGACGGAAGAGGGTTCCTGACGGATCGGTACAGAGAAAGTGGTGGGGGTCGGGGGTTCGACAGGGCAGGTGGCCTGGAGTGCATTCTAAGCATTGTTAGGGCACTTCGAATGGGGTCCTGCTTGTCTGCGGAAAGCAGGAGCCCCATTCCTGGTTCCCCGACCTCTCCGGCTAAGCACTATCATCGAAGCAGGAGCAAGAGACGAAATGGTTCTCGGAGTTCTTCCTTTGGGGATCTGTCTCTCCATCGGATCCCTGGTAGGGTGTTCGGCAATGGCTTCACTGATTTCGCCTCTCTGTTTACGCAGCAGGGCAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTCGATGGCCATGGCCCGTACGGTCATATGGTTGCGAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTAAGTACACATTGGGAGGTCAACTTGACCACAGATGATGTTCTTAGAGAGATAAGCCTCAATACTGGAAGTGTGAACTCAGATGAAGCTACCTCCTTTTTATCTGCTGATGAAGAGTTTAGGGCATCCACTGATGGTGATGGAGCAGAAAAGCAACCTGAAATTTTCCATACCTTGAAGGAGTCATTTCTTAAGGCTTTTAGGGTTATGGATAGGGAACTCAGAATGCACCAAGGTATAGATAGCTTCTGTAGTGGGACAACAGCAGTGACTATGGTTAAACAGGGTCAGGATCTTGTCATTGGAAACGTTGGGGACTCCCGAGCTGTTCTGGGTACGAGAGATAAAGATGACTCTCTTGTTGCAATTCAATTGACTGTGGATCTGAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAGAGGTCGTGTCTTTGCTCTCCACGACGAACCTGATGTTCCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGAGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTTTAATCTCTGTACCTGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTATCAAACAAAGAGGTTGTAAATGTCGTTGCATCGGCTCCAAAACGCACTACTGCAGCTCGAACTTTAGTTGAGACAGCCGTGAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCGGTCGTTTGCCTCTTTCTTGACTCGAACTCCGGAAATCTATCATCTGCTTCCAATACCAAACCAGAGGTGCAACAAAGTTTAATAGATCACATCAGCAGTGCAGTTGAGAGTGAAGATTTCTCTAGCCCAAATGGTCTGAATCATTCGGGAACCGTCCAAATCTGCAAGGAAACTCCGGAGGATGGAAGCGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGCGTCTCACGCGTAAATACTCTGGTAAACCTGCCGAGATTCGATCCTGGAAAAGAAGATAAGAAAGGCCGGAAGTAA 1671 46.8 MPSGNEHKKGGEEIDSRICSSIQFQIPNSVKVSLKGRDGRGFLTDRYRESGGGRGFDRAGGLECILSIVRALRMGSCLSAESRSPIPGSPTSPAKHYHRSRSKRRNGSRSSSFGDLSLHRIPGRVFGNGFTDFASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSTHWEVNLTTDDVLREISLNTGSVNSDEATSFLSADEEFRASTDGDGAEKQPEIFHTLKESFLKAFRVMDRELRMHQGIDSFCSGTTAVTMVKQGQDLVIGNVGDSRAVLGTRDKDDSLVAIQLTVDLKPNLPAEAERIRKCRGRVFALHDEPDVPRVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVNVVASAPKRTTAARTLVETAVKAWKHKYPTSKIDDCAVVCLFLDSNSGNLSSASNTKPEVQQSLIDHISSAVESEDFSSPNGLNHSGTVQICKETPEDGSEEEDESKEEEHSEMGIEWSALEGVSRVNTLVNLPRFDPGKEDKKGRK 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2450184 2453415 - CmaCh01G004830.1 Cma01g00483 286176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00483 556 MobiDBLite consensus disorder prediction 483 529 - -
Cma01g00483 556 MobiDBLite consensus disorder prediction 483 502 - -
Cma01g00483 556 ProSiteProfiles PPM-type phosphatase domain profile. 133 452 IPR001932 -
Cma01g00483 556 SUPERFAMILY PP2C-like 131 453 IPR036457 -
Cma01g00483 556 PANTHER ALPHABET, ISOFORM E-RELATED 74 540 - -
Cma01g00483 556 Pfam Protein phosphatase 2C 233 431 IPR001932 -
Cma01g00483 556 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 74 540 - -
Cma01g00483 556 CDD PP2Cc 133 452 IPR001932 -
Cma01g00483 556 Gene3D - 133 454 IPR036457 -
Cma01g00483 556 MobiDBLite consensus disorder prediction 80 115 - -
Cma01g00483 556 SMART PP2C_4 122 450 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00483 Cma-Chr1:2450184 Cma08g00078 Cma-Chr8:406155 2.75E-160 dispersed
Cma01g01746 Cma-Chr1:11798990 Cma01g00483 Cma-Chr1:2450184 7.22E-96 dispersed
Cma03g00317 Cma-Chr3:4017893 Cma01g00483 Cma-Chr1:2450184 1.28E-107 dispersed
Cma05g01091 Cma-Chr5:8604749 Cma01g00483 Cma-Chr1:2450184 6.86E-119 dispersed
Cma11g00930 Cma-Chr11:4884425 Cma01g00483 Cma-Chr1:2450184 8.75E-165 transposed
Cma16g01014 Cma-Chr16:7794965 Cma01g00483 Cma-Chr1:2450184 2.35E-164 transposed
Cma01g00483 Cma-Chr1:2450184 Cma05g00869 Cma-Chr5:6071902 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00483 - - csv:101222150 827.009