Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00494 ATGGGAATGTTTCGGAATCCTACAACGCGAAACGGGGAGTATTTAGAAGGGATGATAAATGAGTATGTTGGAGGAGGAAAGGGAAAGTTAAGAGCTCAAAGAAATACCTCAACAAAGCTTGTTACTTCTCTTACATGTCTCCAGTTTGCCTTTGCAATATATGCAACGTTTCTACTTTATTATGTGAGCCCTGCAATAGACTTGAGAACCAAACCAGATTTCTCTTGGGCTACTAGAATTGCTCAGCAATGGAAACAGTTTGTAATACCGCCCCACGTCGTGGGACGATATCAAGAACAAACTTCTTTTGCAGAATTCAGACCGATCACACCGGAGGAAGCTTGTGAGAACGAGAAGATTGATTTCGAGCAAAAGAAGTCGAATGATGCACAGATGATCAAGTTGAAAACAGAGCTTTATAATGAGGTTTTAGATTTTCAAAGCCAAAGCTTCGGAACTGAAACTCTTTCTCAGCTTATGGCAATGAAGTCTAAATGGGATTTGAGAGGGAAAAACAAGCCAAAAGTTACTGTGATCTTGAACCATTTCAAGAGGAAAACTCTGTGTGCACAGATTAACTCTTTGCTGCATCAAACTCTTCCTTTCCACCATGTTTGGGTGCTTGCATTTGGGAGCCCAAATGAGCTCTCACTGAAGAGAATTGTAGATAGCTATAACAACTCAAGAATTAGCTTCATTAGTTCAAGCTATGACTTCAAGTACTATGGAAGGTTCCAAATGGCCTTACAAACCGAGGCCAATTTAGTATACATTCTCGACGACGACATGATTCCTGGCCATAAAATGCTACAGATTTTGTCTCATGTAGCAGGGACGGAGAAATACAAGAATGCAGTTTTGGGCAGTATAGGGAGGATTTTGCCATTTCGACAGAAGGATTTCACGTTCCCGAGTTATCGAAAGTTTCGTTCCAAGGAGGCAGGGCTTTACTTGCCTGATCCTGCTTATAACATCACAGTCAATAAAATTGTGCAGGTGGATTTTCTCTCCAGCTCTTGGTTCTTATCTGCAGAGCTTGTGAAGACACTTTTCATTGAAACTCCCTTCACCTTTGCAACAGGGGAAGATCTCCATCTAAGCTATCAGCTTCAAAAATACAGAAACGCTGGCTCGTTCGTTCTTCCTGTAGATCCAAAAGACAAGGAAACCTGGGGTGACAGTGAACACAGGCTGGCTTACGTGTCCGAGACAACTGTGATATTTAAGGACATCATTCAAGTTCGGGATGATCAATGGTGGAAAGCGCTGTCTACTGGCTATGTCACACAATGGGCAGCCATGCATCCTCAAAAGATAGATGCTCTATTCTATGCTCATTCTGTTGATGAAGTTAAAGCACTAGCCCCACTTCTTGAAAAGTTCAGGTCCACTGTTGGCAAGAAAGCTTATATTGTAGTGTCGGGAGGCACTTTTTGCCCATGTGAAGATGCTGCAGCTGCTCTTAAATGGCCTAAGTTGGTGTGTAAAGAACGGAGGTTCAAGATATTTGACTTAGCCATTGGGGCTCTCTCTGGCCTATCAAATTCTGAGGTGCCCGTGGTGCAAGCAGTGTATGCTAGTATGAAGGGATTGATCCAAATACACAATCCAAGCATCATCGTCACGGTAGCCGATCTCGATCCTAACGTAAAGAAGGCTTTGAAAATGGCGTCCGAGGCTAACATGAATACTATAACACTGATTCTTTTACCAAGGCCTTCCATTTCAAAAGTTCTTTGGATGGCTGATCTTCGACCAACCGCAATTCCAAATTGGAACAAGATGCGGATTTCAATCAACATTATCACACAAAACCGCGCCAATTCGTTAACAAGGCTTCTCAAATCACTCAAAGATGCATATTACCTAGGGGATGAGGTACCTATCAGCTTCAACATGGACAGCAAAGTGGATGAGGAAACTATCAAATTAGTAAGCTCATTTGAGTGGCCCCATGGCCCCAAAAGCCTTAGAAGGAGAATCATCCAAGGAGGGCTAATACGAGCAGTGAGCGAGAGTTGGTATCCAGCTTCAGACGACGATTACGGTCTCCTACTCGAAGATGATATTGAAGTCTCTCCATACTACTACCTATGGATCAAATATGCTCTCCTAGCATACCACTATGATCCACAAATATCTCTACCTGAGCTATCGACGATATCGCTTTACACACCTCGACTAGTCGAAGTGGTTAAGGAAAGGCCTAAATGGAATGCAACAGAGTTTTTCAAGCGGATTCATCCAAACACACCTTACCTCCACCAGCTGCCCTGCAGCTGGGGAGCAGTTTTCTTCCCCAAACATTGGAGGGAATTTTATGTTTACATGAACTCAAGATTCACAGAAAATGCCAAAGAAAATCCAGTTCAGATCCCCAAATCAAGAACAAACGGTTGGCAGGCATCATGGAAGAAGTTCCTAATCGACATGATGTACCTAAGAGGCTACGTAAGTCTGTACCCAAATTTCCCAAATCAAGCCAGTTTTTCAACAAATCACATGGAACCAGGCGCTCACATAAGTGCAAAAGACAATATCGTGAAGCATAACAAGGAAGATTTCGAGGTTCCATTACTCAAAGAAAACTTCGTGAATTTCTTACCTAACGGCAAATTGCCGGCGGCTTCGAGACTGCCATCGCTGAACCTCTTCAATCAACCGGTTTCTCTGAAGGGACTCAAATCCGCCGGAGCCAAACTAAGGCAAGATGTTCTGAAATGCGAAGTTTCGGAGATCGTAGCGGTGAATCATCAAACTGGTCTGCCTTCGCACTGCGCAAAATTCTGA 2790 43.26 MGMFRNPTTRNGEYLEGMINEYVGGGKGKLRAQRNTSTKLVTSLTCLQFAFAIYATFLLYYVSPAIDLRTKPDFSWATRIAQQWKQFVIPPHVVGRYQEQTSFAEFRPITPEEACENEKIDFEQKKSNDAQMIKLKTELYNEVLDFQSQSFGTETLSQLMAMKSKWDLRGKNKPKVTVILNHFKRKTLCAQINSLLHQTLPFHHVWVLAFGSPNELSLKRIVDSYNNSRISFISSSYDFKYYGRFQMALQTEANLVYILDDDMIPGHKMLQILSHVAGTEKYKNAVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYNITVNKIVQVDFLSSSWFLSAELVKTLFIETPFTFATGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIIQVRDDQWWKALSTGYVTQWAAMHPQKIDALFYAHSVDEVKALAPLLEKFRSTVGKKAYIVVSGGTFCPCEDAAAALKWPKLVCKERRFKIFDLAIGALSGLSNSEVPVVQAVYASMKGLIQIHNPSIIVTVADLDPNVKKALKMASEANMNTITLILLPRPSISKVLWMADLRPTAIPNWNKMRISINIITQNRANSLTRLLKSLKDAYYLGDEVPISFNMDSKVDEETIKLVSSFEWPHGPKSLRRRIIQGGLIRAVSESWYPASDDDYGLLLEDDIEVSPYYYLWIKYALLAYHYDPQISLPELSTISLYTPRLVEVVKERPKWNATEFFKRIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNSRFTENAKENPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHISAKDNIVKHNKEDFEVPLLKENFVNFLPNGKLPAASRLPSLNLFNQPVSLKGLKSAGAKLRQDVLKCEVSEIVAVNHQTGLPSHCAKF 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2518773 2523291 - CmaCh01G004940.1 Cma01g00494 286187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00494 929 CDD Glyco_tranf_GTA_type 178 288 - -
Cma01g00494 929 SUPERFAMILY Nucleotide-diphospho-sugar transferases 170 373 IPR029044 -
Cma01g00494 929 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 596 845 IPR029044 -
Cma01g00494 929 SUPERFAMILY Nucleotide-diphospho-sugar transferases 594 781 IPR029044 -
Cma01g00494 929 PANTHER - 28 929 - -
Cma01g00494 929 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 159 384 IPR029044 -
Cma01g00494 929 PANTHER OSJNBA0004B13.7 PROTEIN 28 929 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00494 Cma02g01290 CCT
Cma01g00494 Cma13g00250 CST
Cma01g00494 Cma14g01176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01290 Cma-Chr2:7568444 Cma01g00494 Cma-Chr1:2518773 2.72E-27 transposed
Cma01g00494 Cma-Chr1:2518773 Cma13g00250 Cma-Chr13:2067977 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00494 - - csv:101202906 1775.76