Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00505 ATGCTCTCTGTGAATGAGCTTCCTCCATTGGTTCGGCTCATGGAGGAGGAGGAGCTATTTTCGTTCTGCATGTTCCGTTGGAGTTTCCTAGGGTGGATGGAACATTGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTTCCGCAGAATTATTTGCGAGTAGTGGGGGAATTATCCAGTAACTCTGGCGAACAATTGGGTTTTCAGAACTCGGAGCATTCGGGGCTTGATCTGGATCTTGTTCGAATTCAAAGTTTTAATAAGAACGCGATTTTGCCTCATGATTTGTCTTCTTTTCCGGCAGAGATGATTAATTTTTCAAGGGATTCCAACGTTTTATCGGACCAAAGGCACATAATGTTGCGTCAAGAGCCAGAAGACCCTGGTCAATGCAGTAGGCAAATTCTGGCAGATGCTTCGTTGGGTTCTTTTGCCAACTCTTTGTTGAAAGCCTCTGGCGAAATTATGAATAATTCTTTGGGAGATTGGGTGGTGAACTGTGGAAGTAATTCTTTGGGAGGTGAAATGTTGAATGAGGAAGTAACGGATTCTACTGTATATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCAACCTCTTTTAACAATCCATCCAACGAAACATTCATTCAGGATGGACAAAAGCGTATAGCAGGAGAATTGCATTTGCCTCCAATTTACCAAAATAGTCTTCAGGGTGTTACTTCAGCCTCTATTGGAACTCAGGACATGGAAATGACTTCCATCGTGCAGCATAATTTCACTGAAATTAACCAAACTGGTTCTTGTGAAGGCAGTGGAAATGAGCTTGCTCTTCTTCCTGTGTACAGGGATCAGCCGAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACAGATAGAACTTTCTATAACTGCCGCAGCTGGACTGGCGATTTGGGTTCAATTGCAAGAAAAACTGGTGAAGAATTGAGAACTTTTATGAGTGATTCCAATCCACAAGGTCTATCTCTGTCGCTTTCTTCGAATCCGCCATCTAAATTGCCCACCGCCCAGTTCGAAGAATCAGAGGAATTACAGGAAAATATGACCGTGTTGAAAAATCCCCAAGAATCCAAAGCAGGCAAATCTGAGAATTTTTGTAGATTACCAAACCCAACATCTATTGGCAATAAAAATCATGGGAAATCTCTTCAAGACGCGATGGGAGCTCCTATGAACACATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGTTATGCGACCATTTTAAAGAGTTCAAAATTCTTGAAGCCAGCCCAACTATTGTTGGACGAATTTTTTGGCTCGAATGGTCAAAAGTTTGTCCAACCATATGAAGTATTTGAGAAGACATCTGGGGAAGTTGGTGCCTCAGCGGTCCATAGTGCATTTAGAAACGAGGTTGTTAAAGAGAATAGTTCATGTGCTGAAGCCTCTACGTTCTGTGGTTCGAACGAGACAAATGTTAGTGGAGTTGGGAGCATCTCTACTGAACCTCATCAACCAGAGTATCAGCAAAAGAAAGCGAAACTTCTATATATCCTAGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTCTCATCCTTTGAATCAGTAGCTGGTCTTAGTTCTGCCACACCCTATATTTCCCTGGCGCTCAAGACAGTCTCTAGGCACTTCCGCTGTCTGAAGAACGCCATCTCAGAACAATTGAAGTATCTGAGGAAGGTATTAGGTGAGGATTTGTCATCCCCCTCCGCCGGGACAAGCGGCAGCAAAGGTGATGCAAATTCGGCTAGGTTGAAATACATGGAACAGAGCTTCCAAAAGCAAAAATCTGGCATGGTCAATATGGGATTCCTCGAATCCCAACATGTGTGGAGGCCGCAGAGAGGTCTTCCAGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACAGACACAGATAAGCACATGTTAGCCACTCAAACAGGCCTGTCTCGTAATCAGGTGTCAAATTGGTTCATAAATGCTCGAGTGCGAGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTGGAAACTAAGGGCATGGCCGAAATGAACAACAAAAGCCATGGTACGAAAGATGGTAGTTCTACAATAGAAAACACAGCCGGTTGGATCAGTAGTGAACAACAGCCTCTTAAAAACCATGGTGTTGCAAATGAAATTGCCAGTCATCATCTGCAGTGCTTGGGGGTGGATTCCTCAAGTGGCGATAGAAATGGAGTAGGCAGTAGCAACCAACAGTGTGATCAAGACAAACAATCCAAATTGGACCAAGGGATTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCGAGCCCGTCCGGCTGAGGTTGGAGGGCTTGGATCTGTCTCTCTAACATTAGGACTACACCACCGAGTTGAGAGTGCCCACCATCAACAGCAGCATCACCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAGGCCAAATGGTCCATGATTTTGTGGGGTAA 2577 44.32 MLSVNELPPLVRLMEEEELFSFCMFRWSFLGWMEHCYGFEQHVAQQSRRDKLRVPQNYLRVVGELSSNSGEQLGFQNSEHSGLDLDLVRIQSFNKNAILPHDLSSFPAEMINFSRDSNVLSDQRHIMLRQEPEDPGQCSRQILADASLGSFANSLLKASGEIMNNSLGDWVVNCGSNSLGGEMLNEEVTDSTVYSLKPTCIGFQTSTSFNNPSNETFIQDGQKRIAGELHLPPIYQNSLQGVTSASIGTQDMEMTSIVQHNFTEINQTGSCEGSGNELALLPVYRDQPNVLPYDSTGSWTDRTFYNCRSWTGDLGSIARKTGEELRTFMSDSNPQGLSLSLSSNPPSKLPTAQFEESEELQENMTVLKNPQESKAGKSENFCRLPNPTSIGNKNHGKSLQDAMGAPMNTYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFFGSNGQKFVQPYEVFEKTSGEVGASAVHSAFRNEVVKENSSCAEASTFCGSNETNVSGVGSISTEPHQPEYQQKKAKLLYILEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRCLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGMVNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGTKDGSSTIENTAGWISSEQQPLKNHGVANEIASHHLQCLGVDSSSGDRNGVGSSNQQCDQDKQSKLDQGIQSNMEGELMGFMPYRARPAEVGGLGSVSLTLGLHHRVESAHHQQQHHQMQQQDDQLIRHYGGQMVHDFVG 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2580105 2584179 - CmaCh01G005050.1 Cma01g00505 286198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00505 858 SMART HOX_1 636 700 IPR001356 GO:0003677
Cma01g00505 858 MobiDBLite consensus disorder prediction 330 350 - -
Cma01g00505 858 Pfam Associated with HOX 425 577 IPR006563 -
Cma01g00505 858 ProSiteProfiles 'Homeobox' domain profile. 633 696 IPR001356 GO:0003677
Cma01g00505 858 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 825 - -
Cma01g00505 858 Pfam Homeobox KN domain 653 692 IPR008422 GO:0003677|GO:0006355
Cma01g00505 858 SMART prehox3 420 578 IPR006563 -
Cma01g00505 858 MobiDBLite consensus disorder prediction 758 785 - -
Cma01g00505 858 Gene3D - 639 701 - -
Cma01g00505 858 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 97 825 - -
Cma01g00505 858 CDD homeodomain 636 697 IPR001356 GO:0003677
Cma01g00505 858 SUPERFAMILY Homeodomain-like 638 702 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00505 Cma13g00244 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00505 Cma-Chr1:2580105 Cma20g00823 Cma-Chr20:3913634 6.44E-73 dispersed
Cma03g00397 Cma-Chr3:4419767 Cma01g00505 Cma-Chr1:2580105 8.59E-71 dispersed
Cma07g01019 Cma-Chr7:5289253 Cma01g00505 Cma-Chr1:2580105 4.38E-38 dispersed
Cma01g00505 Cma-Chr1:2580105 Cma13g00244 Cma-Chr13:1997873 9.94E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34260 PF07526 POX 7.00E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00505 - - cmax:111493386 1636.7