Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00515 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCCTTACGGCCTCCGATCGTCTTTCCCACAGATCCCAATTTGTCGGTGGCCTCTTTTCTTTTCCGAAACTCATCGTCTTATCCAAACAGACTCGCCATAGTTGATGCGGAATCCTCTGATTCCGCGTCGTATTCCCAGCTTAAAGCCTCTGCAATTAAGATCTCCAATGGCTTGCTCCAATTGGGTATCGAGAAAAACGACGTGGTGATGATTTTTGCTCCAAATTCTGTTGAATTTTCCATTTGTTTCATTGGAATTGTTGCTATTGGGGCTATTGTCACCACTTGTAATCCTGTTTACACGGTCTCTGAGTTAAGCAAGCAAGTTAGAGATGCTAAGCCCAAACTTATGATATCTGTTGTTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACAGTGTTACTAGACAAGCAAATTCCTTTGGAAATCCAGTCCTCCAAAATTTTATGTTTCAATGATTTGATAAACATGGCTGGCGATAAATCTGGCTCCGAATTCCCAATTGTTGGGGTGAAGCAGAGTGATACAGCTGCTCTTCTGTATTCATCAGGAACAACAGGAGCCAGTAAGGGTGTGGTTCTGACTCACAGAAACTTCATAACATCTTCACTGATGATAACATTGGATCAGAAGACTAATGGAGACGAAAATGGCACATATCTGAACTTTTTGCCGATGTTTCATGTGTTTGGATTGGTTTGTATAACATGTGCGCAGCTGCAGAGAGGAAACACCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCCTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTATGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCAAAGCAAAGTGTGGTAAAGAAATACAACCTTTCATCCCTGAAGCATATCGGTTCAGGGGCTGCACCTCTTGGGAAGGAATTAATGGATGAATGTGCTAACAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTTCTTTGGAGAATCGAGCAGTTGGCAAACGAAATACAGGTTCGGCTGGAACACTTGCCTCTGGTGTTGAGGCTCAAATAGTCAGCGTAGATACTTTGAAGCCTCTTCCTCCTAATCAATATGGAGAGATACTGGTTCGGGGACCGAATATGATGCTTGGTTACTTAAACAATCCACAGGCCACCAAGCAAACTATTGACAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTTGATGAAAATGGTCAGCTTTATGTTGTCGACAGAATTAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTAGAAGCACTGTTGGTCTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCCGACGATGAAGCTGGAGAAGTTCCAATTGCGTATGTCGTGCGATCTACCAATAGTTCTATGACCGAAGAGGACGTCCTCAAATTTGTGGCCGATCAGGTTTCTCCTTACAAGAGGCTAAGAAGAGTGACATTCATCAACAGTGTCCCCAAGTCAGTTTCTGGGAAAATCCTCAGGAGAGAACTCATTGAGAAAGTAAGAGCTAAAATCTAA 1632 43.93 MEKSGYGRDGIFRSLRPPIVFPTDPNLSVASFLFRNSSSYPNRLAIVDAESSDSASYSQLKASAIKISNGLLQLGIEKNDVVMIFAPNSVEFSICFIGIVAIGAIVTTCNPVYTVSELSKQVRDAKPKLMISVVELWDKVKDLNIPTVLLDKQIPLEIQSSKILCFNDLINMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVVLTHRNFITSSLMITLDQKTNGDENGTYLNFLPMFHVFGLVCITCAQLQRGNTIVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVKKYNLSSLKHIGSGAAPLGKELMDECANNIPSAVVLQGYGMTETCGVVSLENRAVGKRNTGSAGTLASGVEAQIVSVDTLKPLPPNQYGEILVRGPNMMLGYLNNPQATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDDEAGEVPIAYVVRSTNSSMTEEDVLKFVADQVSPYKRLRRVTFINSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2648430 2651830 + CmaCh01G005150.1 Cma01g00515 286208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00515 543 CDD 4CL 21 535 - -
Cma01g00515 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Cma01g00515 543 Pfam AMP-binding enzyme 35 445 IPR000873 -
Cma01g00515 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Cma01g00515 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cma01g00515 543 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 542 - -
Cma01g00515 543 Gene3D - 441 542 IPR045851 -
Cma01g00515 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 542 - -
Cma01g00515 543 Gene3D - 10 440 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00515 Cma-Chr1:2648430 Cma14g00225 Cma-Chr14:991400 0 dispersed
Cma17g00916 Cma-Chr17:6899532 Cma01g00515 Cma-Chr1:2648430 1.77E-141 dispersed
Cma01g00515 Cma-Chr1:2648430 Cma09g00069 Cma-Chr9:298453 5.61E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00515 K01904 - csv:101220141 955.281