Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00525 ATGATTGTATCACCACCGCCAAGCTCCATCAATGGCGGAATCTGCAGGGCAGAGCTGTCCTGTTTCATTCAACAAGTGGTAACGGGGCGGTGGTTTTCTCTCTTCGCTTCCTTCCTCATAATGTCCGGCGCCGGCGGAGTCTATTTATTCGCTTCTTACTCCAAAGACATCAAATCCACGCTCAAATGCGACCAAACCACACTCAACAAAATCGGGTTTTACAAAGATTTGGGATCCAACGTCGGCGTCATTGCCGGCTTGCTAGCCGAAGTAGCACCCACTTGGTTCGTTATCCTCATCGGCGCCGCCCTTAACTTCGTCGGATATTTCAAAATATGGCAAGCCGTCACCGGAAAAATTATCCGTCCGACGGTGGAGTTTTTCTGCTTTTACATTATGGTCGGAGCAAACTCCCAGAATTTCGCCAACACAGTCGTCCTGGTGTCGTGCGTCAAGAATTTCCCAGAACGGCGAGGCGTCATGTTGGGGCTTCTAAAGGGGTTCGTCGGCTTAAGTGGCGCTATCATGACACAGATTTACGGCGCCTTTTATGATCATGATACCAAATCTCTGATTCTTCTACTCGCCTGGTTCCCCTCTTTGATTTCCATCATTTTTGTTAAAACAATCAGGGAAATGAGAGCCGTCAAACACCCAAATGAATTCAGAGTTTTTGTTCAGTTTCTTTGCGTCACCATCATTTTGGCTCTGTTTCTCACCGCCCTGATTTTTGTTCAGAAAAAAGTTCAATTCAACCAAACCGCTCACATTACCATCGTCGCCGCAATCCTTGCGTTGCTTCTTGTTCCATTGTTGATCGCCATTAGAGAAGAGATTATCATGTGGAATCTCAATAAAAGAACTGTCGGGAATCGTTTCACAAGAATCAGAATCGACAACCCCCAATCGGCTCCATCATGCTCTGCTTCTTGTTCTTCCTCCTCTGTTTTAGAACTACCAAAACAGAGCAATTCCTGTTTCGCCAACATCTTCAACAAACCCAAAAGAGGAGAAGACTTCACAATTCCTCAAGCGATTTTCAGCGTCGACATGTTGATTTTGCTCACCACCATGTTGATCGGCGTCGGCGCAAATTTAACCGCCATCGACAATCTCGGCCAAATCGGAGAATCCCTGAATTACCCACCGGAAACAATCAACTCCTTCATCTCTCTGGTCAGTATTTTCAACTTCACCGGCAGAATCTTTTCTGGGTTCGTCTCAGAAATCTTGCTCGAGAAGTTCAAATTCCCCCGGCCGATGATGCTGACACTCATCCACTTGGTTTCCTGCGTTGGCTACCTCATCGTGGCCTTCCCCTTCAACAATTCCCTCTGCATTGCGTCGATCATAATTGGGTTTTCATTGGGTTCTCAAGTTCCGTTGCATTTCGCGATGATCTCAGAATTTTTCGGGCTGAAACATTACTCGACGTTGTTCAATTTCGGGCAATTGTCATGTCCGATTGGGTCTTACATTCTGAACGTGATGGTGATCGGAAAGCTGTACGACGAGATGGCGTTGACGGGGAATAATGCAAGCGAGTTTCACTGCGAGGGGAGCAAATGCTTTGAACAATCCTTCACGATTCTGGCCGGATTGACGTTCGTTGTGGCCATGGTATCACTGGTTTTGGTTCGGAGGACGGCGGAGTTTTACAGAGGAGATATATACCAGAAGTTCAGAGAAGATATGGATTCTTTGAAGACAGAAATGGAGTTTTATCCATTGGAATCGAAGAGGATGAAGATTGGGAATTTAACTTTTGATAAACATGCCATCAATTTCAAGAAATGA 1797 45.97 MIVSPPPSSINGGICRAELSCFIQQVVTGRWFSLFASFLIMSGAGGVYLFASYSKDIKSTLKCDQTTLNKIGFYKDLGSNVGVIAGLLAEVAPTWFVILIGAALNFVGYFKIWQAVTGKIIRPTVEFFCFYIMVGANSQNFANTVVLVSCVKNFPERRGVMLGLLKGFVGLSGAIMTQIYGAFYDHDTKSLILLLAWFPSLISIIFVKTIREMRAVKHPNEFRVFVQFLCVTIILALFLTALIFVQKKVQFNQTAHITIVAAILALLLVPLLIAIREEIIMWNLNKRTVGNRFTRIRIDNPQSAPSCSASCSSSSVLELPKQSNSCFANIFNKPKRGEDFTIPQAIFSVDMLILLTTMLIGVGANLTAIDNLGQIGESLNYPPETINSFISLVSIFNFTGRIFSGFVSEILLEKFKFPRPMMLTLIHLVSCVGYLIVAFPFNNSLCIASIIIGFSLGSQVPLHFAMISEFFGLKHYSTLFNFGQLSCPIGSYILNVMVIGKLYDEMALTGNNASEFHCEGSKCFEQSFTILAGLTFVVAMVSLVLVRRTAEFYRGDIYQKFREDMDSLKTEMEFYPLESKRMKIGNLTFDKHAINFKK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2719676 2721567 + CmaCh01G005250.1 Cma01g00525 286218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00525 598 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 17 569 - -
Cma01g00525 598 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 17 569 - -
Cma01g00525 598 Pfam Major Facilitator Superfamily 354 549 IPR011701 GO:0022857|GO:0055085
Cma01g00525 598 Gene3D MFS general substrate transporter like domains 346 553 IPR036259 -
Cma01g00525 598 SUPERFAMILY MFS general substrate transporter 37 552 IPR036259 -
Cma01g00525 598 Pfam Nodulin-like 30 275 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00525 Cma-Chr1:2719676 Cma13g00206 Cma-Chr13:1630082 0 dispersed
Cma13g00207 Cma-Chr13:1638975 Cma01g00525 Cma-Chr1:2719676 1.21E-127 dispersed
Cma01g00525 Cma-Chr1:2719676 Cma13g00203 Cma-Chr13:1611066 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00525 - - csv:101202941 863.218