Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00534 ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAACCATCCTCCGGTCTCAGTCGCCGCCGCCGACGCCGCCTCCTTGTGTCCAGGCTGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCCAGCAATATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCTGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAATTAACTCAAACGCCCGCACCAACACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATAGCAATATCTGGGAGGCTCTTTGGACATGA 588 52.38 MECSDAKSGPTSTILRSQSPPPTPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPDHCSLDNNFSTATPQSYPLFDDSNIWEALWT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2764711 2766563 + CmaCh01G005340.1 Cma01g00534 286227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00534 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 21 194 - -
Cma01g00534 195 MobiDBLite consensus disorder prediction 1 25 - -
Cma01g00534 195 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Cma01g00534 195 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Cma01g00534 195 Coils Coil 122 142 - -
Cma01g00534 195 MobiDBLite consensus disorder prediction 1 16 - -
Cma01g00534 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00534 Cma-Chr1:2764711 Cma04g01242 Cma-Chr4:6371441 2.17E-73 dispersed
Cma01g00534 Cma-Chr1:2764711 Cma13g00195 Cma-Chr13:1537977 5.09E-105 wgd
Cma01g00534 Cma-Chr1:2764711 Cma02g00871 Cma-Chr2:5081153 1.53E-73 wgd
Cma01g00534 Cma-Chr1:2764711 Cma20g00467 Cma-Chr20:2255365 7.54E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34264 PF03195 LOB 7.60E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00534 - - csv:101222262 301.597