Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00538 ATGGCCGCCGCTGCCGTGGATCCTTCGTCGCTGCAATTCACGCCGACTTGGGCCGTTGCTGCCGTCTGCTTCATCTTCATCTCTCTCTCTCTGTTCCTTGAGCATTTGATTCATCTCCTCTCCAATTGGCTGAAACGGAAGAGGAAAACGGCATTGTTCGATGCGGTTGAGAAGCTAAAATCAGTTCTGATGCTGCTAGGGTTCATGTCGCTAACACTGACGGTAACGCAACAGCCGGTATCGAAGATTTGTATTCCGAATAGCTTAGCGTATACGATGCTTCCATGCCAGAGAGAAATACAGATCAAAGCAGATAAGAATTTGGAGATGGAACAATCGCGATCAGCCTCCTCTGCAAATCGGTCGTTTTCATGGATGATGGAAAAATTCGTGAGCCTCGCGGCGGAAAGTGACGATAGTGGTGGTGGTGATGATTCTTCTTCTCCATCATCTTCTTCATCATCTTCTTCATCTTCGGATTACTGTACTGCGAAGGGGAAGACCTCGCTGATATCGCAAGCAGGAATGAATCAACTGAACAACTTCATATTCGTGCTGGCTGTTATGCAGATTGTTTACAGTGTCCTCACCATGGCTTTGGGAAAGGCCAAGATGAGGCGTTGGAAAGCTTGGGAGGAAGAAACTCATACCTTGGATTATCAAGTGGCCAATGATCCAAATCGTTTTAGATTCACAAGGCAAACAACGTTTGGACGACGACATATTAGTTCTTGTGCATCACCACCGTTACTTCTTTGGACGAAATGTTTCTTTAGACAATTCTTTCGTTCTATTGCCAAAGTTGACTACTTAACCCTTCGTCATGGTTTCGTATGGACTCACATACGTGGAAACACTTCTTTTAACTTCCAAAAGTACATTGAAAGATCGTTGCATGATGACTTCAAAGTCGTCGTTGGCATGAGTCCTTTCATGTGGCTCATAGTAGTTATCTTCATTCTCGTAGATGTGCATGGTTGGAATGCATATCTGTGGGTGTCTTTTCTTCCGCTAATTATAGTACTAGCTCTTGGAACAAAGCTTGAAGTAATCGTAGCACGGCTTGCGCTTGAGCTTAAACACAAGACGGATGTGATCAAAGGAGCCCCAATGGTTGAACCAAGTGATGATCTCTTCTGGTTCAATCACCCCAAATTTGTTCTTACCCTCCTTCATTTCACCTTGTTTATGAATGCATTCGAGCTTTCTTTTATCATTTGGGTCACGCTACAATATGGGATTAAATCTTGCTACCATGAAAAGTTGGTGGTCATCATTATAAGAATAGTCTTGGCGGTTACCGTCCAAGTATTGTGCAGCTACAGTACTCTACCTCTCTATGCTCTTGTGACACAGATGGGGTCACAGTTCAAAGCTGCAGCATTAGAAGAACATACCGCCAAAGCCATAAAGAAATGGCACCAAGATGTGAAGCAAAAGAGAAAACAGAGTAACCATCACCAGTACTCCAACGACCTAGACCTAAGCCAACACCAAGAGGGATTGTCTCCCTTGGTTGCTGGGCACTTGTCGTCGATGGTTTCCGAGAGCAGCAACAAAACCCAAAGCTCCCAAGAGATGACCCCTTTCCATCACCGAGCTCCCACTTTTTCTGAGCTCAGTTATCTTGACATTGAATCCAATGAGATTGTTGAAGAAGTCACAGAAGAAACTGCAGTCATAAAAGGACTGAAGCCGAAGGTTCTGTCAAGAAGAGGATCTTTGAGAAATCTTCCCCAATGTTGTAGTACTAATCGAATATCTGTTTCTGTTTCAGAAACCCTAAATCGGATCTCAAATTCAGACCTGATACGGATGGAAGCTGCCAGAAATGGCGGAAGAGCCGATGGCTCTTCTTCTCCGAAGCCCTTGAAGTTCTCGGCGTACCAGAACCCGGCCTTATCCGCCGCTTTAACTGTCAATAGCATCCAACCTTCCAAGTTCACCTTCCTCTGCATCTTCTCCCTCTCCTCTGCATCTGCATTTGCCTTCCTTCGCATTGTTTCCTGGGAGAATGCGATTATCGACAGCTTGAAGCTGAAAAACATTCCTGAAGAGGCGGCCTATGTTTCTGCCAAGGCTGTACAGACAGTGGTAGGCTTAGTATTTTTGGGAACAGTATTAGCTTTCTTCAAAGCAATATTCTTGTATAGAAGAAGATTTAGTGGTGGTTTGTCTGTTGTATCTGCCTCTAATGGTTTCAAGGATCAAACACCTCTTTCCAAGCGTCAGCTAGGGCTTATGGGATTAAAACCAAAGGTTGAGAATGGGACATCTGAAAAGGCATTAAAACCTCCAAAATCTAAACCCTACTCATCACCTCCTTCTTCTGATGTTCTTGTTCCTCTTCATCAATCTATGGGCAGTTTTGGTTATTCATCTCAAAGAAACACAGATAAATCGAACTCTGTCAGTGGAAGTAAAATGCAGTCTTTCACAACACCTGCAAAGTCCCCTGGTTCTGATTCTTCGTTTTATCTTGTCTCTGGAGTGGCCTCACCATTGCCTTCTGCCCTGAGTACGTCGGGACGGGATTCTGTGGTTTGTACCTCATGGTCAAGCAAGCGAGTATCCTCTCTGAAAGAAATTACATCCGAAGAAGAATTTGAACGATTTCTTACTGAAGTAGATGAAAAATTAACCGAGTCTGCAGGAAAATTAGCTACTCCACCCCCCACCATCAGCAGTGTTGGTATAACCAGTCCCAGTACTGTTGATACTTCAGCTAATACCTCTGGAACTACCAGAAGTACTCCCTTGAGGCCTGTAAGAATGTCTCCAAGTTCACAGAAATTCAAAACTCCTCCTAAGAAAGGAGAAGGTGATGCTCCCTCCCCAATGTCTATGGAGGAAATGGTTGAAGCTTTCAAGTATTTGGGAGTATATCCCCAAATCGAGGAATGGCGTGATCGTCTTAGGCAATGGTTTTCTTCTATTCTGCTTAATCCTCTTGTAGAAAAGATCGAAACCAGTCATATTCAGGTAAAGGAAGTGGCTGCTAAACTCGGTATCTCAATTACAGTAAGTCCAGTAGGCGATTCCTCTGGAACCCTTCCTACTGTATCTTCGGTTGACAGGATTAATGAATGGCAACCAACATTGGCCCTTGATGAAGATGGGCTTCTCCACCAGTTACGAGCAATGCTTGTTCAATCCATAGATGCATCTAAAATTAAGATGCCTCTGGTGAATGCACAACGGTCCCCTCAGCAGAATCCCTTAGTTCCCATCATGCAAGAGTGTGTTGATGCCATTGTAGACCACCAGAAACTTCTTGCTTTGATGAAGGGTGAATTGGTCAAGGGCTTGCTGCCTCAAAGTAGCACTCGAGCAGATTATACAGTACAAAGAATCAAAGAGCTTTCTGAAGGATCCTGCTTGAAAAATTACGAGTATCTTGTGACTGGGGAGGTATATGATAAGAAGAACAAGAAATGGACACTTGACCTTCCAACCGATTCTCACTTACTCTTGTATTTATTCTGTGCTTTCCTTGAGCATCCGAAGTGGATGCTACATCTAGATCCTTCAACCTATGCCGGAGCTCAGTCCAGTAAAAATCCTTTGTTCTTGGGGGTTCTTCCTCCAAAAGAACGGTTTCCCGAGAAGTACATAGCCATAATATATGGTGCTCCTTCCATTATTCACCCTGGAGCTTGCATACTGGCTGTTGGGAGGAAAAGTCCCCCAGTTTTCTCTTTGTATTGGGATAAGAAGCTTCAGTTTTCCCTTCAGGGAAGAACAGCATTGTGGGACGCCATATTGCTCCTGTGTCACAGAGTCAAGGTCGGATATGACGGAATTATTCGAGGTATGCACCTTGGTTCTTCTGCACTAGGAGTTCATCCGGTTTTGAATTCAGAGCCTGTAGACTGA 3876 44.27 MAAAAVDPSSLQFTPTWAVAAVCFIFISLSLFLEHLIHLLSNWLKRKRKTALFDAVEKLKSVLMLLGFMSLTLTVTQQPVSKICIPNSLAYTMLPCQREIQIKADKNLEMEQSRSASSANRSFSWMMEKFVSLAAESDDSGGGDDSSSPSSSSSSSSSSDYCTAKGKTSLISQAGMNQLNNFIFVLAVMQIVYSVLTMALGKAKMRRWKAWEEETHTLDYQVANDPNRFRFTRQTTFGRRHISSCASPPLLLWTKCFFRQFFRSIAKVDYLTLRHGFVWTHIRGNTSFNFQKYIERSLHDDFKVVVGMSPFMWLIVVIFILVDVHGWNAYLWVSFLPLIIVLALGTKLEVIVARLALELKHKTDVIKGAPMVEPSDDLFWFNHPKFVLTLLHFTLFMNAFELSFIIWVTLQYGIKSCYHEKLVVIIIRIVLAVTVQVLCSYSTLPLYALVTQMGSQFKAAALEEHTAKAIKKWHQDVKQKRKQSNHHQYSNDLDLSQHQEGLSPLVAGHLSSMVSESSNKTQSSQEMTPFHHRAPTFSELSYLDIESNEIVEEVTEETAVIKGLKPKVLSRRGSLRNLPQCCSTNRISVSVSETLNRISNSDLIRMEAARNGGRADGSSSPKPLKFSAYQNPALSAALTVNSIQPSKFTFLCIFSLSSASAFAFLRIVSWENAIIDSLKLKNIPEEAAYVSAKAVQTVVGLVFLGTVLAFFKAIFLYRRRFSGGLSVVSASNGFKDQTPLSKRQLGLMGLKPKVENGTSEKALKPPKSKPYSSPPSSDVLVPLHQSMGSFGYSSQRNTDKSNSVSGSKMQSFTTPAKSPGSDSSFYLVSGVASPLPSALSTSGRDSVVCTSWSSKRVSSLKEITSEEEFERFLTEVDEKLTESAGKLATPPPTISSVGITSPSTVDTSANTSGTTRSTPLRPVRMSPSSQKFKTPPKKGEGDAPSPMSMEEMVEAFKYLGVYPQIEEWRDRLRQWFSSILLNPLVEKIETSHIQVKEVAAKLGISITVSPVGDSSGTLPTVSSVDRINEWQPTLALDEDGLLHQLRAMLVQSIDASKIKMPLVNAQRSPQQNPLVPIMQECVDAIVDHQKLLALMKGELVKGLLPQSSTRADYTVQRIKELSEGSCLKNYEYLVTGEVYDKKNKKWTLDLPTDSHLLLYLFCAFLEHPKWMLHLDPSTYAGAQSSKNPLFLGVLPPKERFPEKYIAIIYGAPSIIHPGACILAVGRKSPPVFSLYWDKKLQFSLQGRTALWDAILLLCHRVKVGYDGIIRGMHLGSSALGVHPVLNSEPVD 1291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2790988 2801433 - CmaCh01G005380.1 Cma01g00538 286231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00538 1291 MobiDBLite consensus disorder prediction 141 160 - -
Cma01g00538 1291 Pfam Cytochrome B561, N terminal 625 1285 IPR019176 -
Cma01g00538 1291 MobiDBLite consensus disorder prediction 756 778 - -
Cma01g00538 1291 MobiDBLite consensus disorder prediction 791 821 - -
Cma01g00538 1291 PANTHER UNCHARACTERIZED 616 1289 IPR019176 -
Cma01g00538 1291 MobiDBLite consensus disorder prediction 888 933 - -
Cma01g00538 1291 Pfam Mlo family 10 497 IPR004326 GO:0006952|GO:0016021
Cma01g00538 1291 MobiDBLite consensus disorder prediction 136 160 - -
Cma01g00538 1291 MobiDBLite consensus disorder prediction 883 946 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00538 Cma20g00477 CCT
Cma01g00538 Cma02g00883 CCT
Cma01g00538 Cma20g00477 ECH
Cma01g00538 Cma02g00883 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00538 Cma-Chr1:2790988 Cma13g00190 Cma-Chr13:1471150 0 dispersed
Cma01g00538 Cma-Chr1:2790988 Cma13g00188 Cma-Chr13:1437806 1.21E-158 wgd
Cma01g00538 Cma-Chr1:2790988 Cma02g00883 Cma-Chr2:5245432 1.20E-163 wgd
Cma01g00538 Cma-Chr1:2790988 Cma20g00477 Cma-Chr20:2307515 9.19E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00538 - - bhj:120083853 1152.89