Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00554 ATGTTTGGAAAGACGCTCAAAGTACAATGGCAGATGAGATGGTGGCGCCCTTTCTTCTTCTTCTTCCCTAGATCATCTGCTTCTCTTACTCACTTCCACGGCCAAGAACCATGGAAAACGATTACACGGCTATGGAGATCAATGGCCTTCCCACCTACGGATGGAAGGTACATCCTCTACAACGTTCTCGGCAACTTATTTGAGGTCTCCGCCAAGTACGCCCCTTCAATTCAGCCTGTTGGATGCGGTGCTTACGGCATTGTTTGCTGCACGACGAATTCGGAGACGAAAGATGAGGTTGCGATAAAGAAGATAGGGAATGCTTTTGATATCTGGGTTGATGCCAAGAGAACTCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGAAAATATTATAAAGATCAAAGATATAATTCCTCCACCAGAAAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCATCAGATCATTTGCTCTAGCCAAGCTCTAACAGACGATCACTGTCAGTACTTCTTATACCAGTTCCTACGAGATTTGAAATATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAGGCAATCTGATTCTCAATGAAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACGGATTTTATGACAGAATATGTTGTAACCAGATGGTATCGAGCTCTTGAGCTACTACTTAACACCTCTGAATACACTGCAGCGATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGAGAGGATGCTTCTCTTTAATCCAAGCAAGAGAATAACTGTTGAGGAGGCAATGAATCACCCATATGTAGTGAGTCTTCATGAACTCAATGATGAACCAACCTTCCCTTCTCCTTTCAACTTCGACTTCGAACAGGCATCCTTAGATGAAGAAGATATAAAAGAACTCATATGGAGGGAGTCTCTCAAGTTCAATCCAAATGACATTCAGTTTAACATTTCACTCCTCTTCAGTTCATTGGGTGTTGATTGA 1080 41.48 MFGKTLKVQWQMRWWRPFFFFFPRSSASLTHFHGQEPWKTITRLWRSMAFPPTDGRYILYNVLGNLFEVSAKYAPSIQPVGCGAYGIVCCTTNSETKDEVAIKKIGNAFDIWVDAKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIICSSQALTDDHCQYFLYQFLRDLKYLHSANVLHRDLKPGNLILNENCDLKICDFGLARTTSETDFMTEYVVTRWYRALELLLNTSEYTAAIDIWSVGCILMEILRREPLFPERMLLFNPSKRITVEEAMNHPYVVSLHELNDEPTFPSPFNFDFEQASLDEEDIKELIWRESLKFNPNDIQFNISLLFSSLGVD 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2885039 2887918 - CmaCh01G005540.1 Cma01g00554 286247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00554 359 Gene3D Phosphorylase Kinase; domain 1 311 336 - -
Cma01g00554 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cma01g00554 359 SMART serkin_6 77 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00554 359 ProSitePatterns MAP kinase signature. 109 212 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma01g00554 359 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Cma01g00554 359 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 52 277 - -
Cma01g00554 359 Gene3D Transferase(Phosphotransferase) domain 1 278 310 - -
Cma01g00554 359 Gene3D Phosphorylase Kinase; domain 1 57 157 - -
Cma01g00554 359 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 277 344 - -
Cma01g00554 359 SUPERFAMILY Protein kinase-like (PK-like) 77 306 IPR011009 -
Cma01g00554 359 Gene3D Transferase(Phosphotransferase) domain 1 158 277 - -
Cma01g00554 359 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00554 359 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 277 344 - -
Cma01g00554 359 Pfam Protein kinase domain 77 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00554 359 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 52 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00554 Cma-Chr1:2885039 Cma15g01248 Cma-Chr15:7927658 5.13E-140 dispersed
Cma01g00554 Cma-Chr1:2885039 Cma01g00558 Cma-Chr1:2904448 7.42E-135 proximal
Cma01g00554 Cma-Chr1:2885039 Cma13g00166 Cma-Chr13:1268019 2.17E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68256 PF00069 Pkinase 4.30E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00554 K04371 K14512 qsu:111988666 416.772