Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00554 | ATGTTTGGAAAGACGCTCAAAGTACAATGGCAGATGAGATGGTGGCGCCCTTTCTTCTTCTTCTTCCCTAGATCATCTGCTTCTCTTACTCACTTCCACGGCCAAGAACCATGGAAAACGATTACACGGCTATGGAGATCAATGGCCTTCCCACCTACGGATGGAAGGTACATCCTCTACAACGTTCTCGGCAACTTATTTGAGGTCTCCGCCAAGTACGCCCCTTCAATTCAGCCTGTTGGATGCGGTGCTTACGGCATTGTTTGCTGCACGACGAATTCGGAGACGAAAGATGAGGTTGCGATAAAGAAGATAGGGAATGCTTTTGATATCTGGGTTGATGCCAAGAGAACTCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGAAAATATTATAAAGATCAAAGATATAATTCCTCCACCAGAAAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCATCAGATCATTTGCTCTAGCCAAGCTCTAACAGACGATCACTGTCAGTACTTCTTATACCAGTTCCTACGAGATTTGAAATATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAGGCAATCTGATTCTCAATGAAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACGGATTTTATGACAGAATATGTTGTAACCAGATGGTATCGAGCTCTTGAGCTACTACTTAACACCTCTGAATACACTGCAGCGATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGAGAGGATGCTTCTCTTTAATCCAAGCAAGAGAATAACTGTTGAGGAGGCAATGAATCACCCATATGTAGTGAGTCTTCATGAACTCAATGATGAACCAACCTTCCCTTCTCCTTTCAACTTCGACTTCGAACAGGCATCCTTAGATGAAGAAGATATAAAAGAACTCATATGGAGGGAGTCTCTCAAGTTCAATCCAAATGACATTCAGTTTAACATTTCACTCCTCTTCAGTTCATTGGGTGTTGATTGA | 1080 | 41.48 | MFGKTLKVQWQMRWWRPFFFFFPRSSASLTHFHGQEPWKTITRLWRSMAFPPTDGRYILYNVLGNLFEVSAKYAPSIQPVGCGAYGIVCCTTNSETKDEVAIKKIGNAFDIWVDAKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIICSSQALTDDHCQYFLYQFLRDLKYLHSANVLHRDLKPGNLILNENCDLKICDFGLARTTSETDFMTEYVVTRWYRALELLLNTSEYTAAIDIWSVGCILMEILRREPLFPERMLLFNPSKRITVEEAMNHPYVVSLHELNDEPTFPSPFNFDFEQASLDEEDIKELIWRESLKFNPNDIQFNISLLFSSLGVD | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2885039 | 2887918 | - | CmaCh01G005540.1 | Cma01g00554 | 286247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00554 | 359 | Gene3D | Phosphorylase Kinase; domain 1 | 311 | 336 | - | - | |
Cma01g00554 | 359 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 196 | 208 | IPR008271 | GO:0004672|GO:0006468 | |
Cma01g00554 | 359 | SMART | serkin_6 | 77 | 299 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00554 | 359 | ProSitePatterns | MAP kinase signature. | 109 | 212 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cma01g00554 | 359 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 104 | IPR017441 | GO:0005524 | |
Cma01g00554 | 359 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 52 | 277 | - | - | |
Cma01g00554 | 359 | Gene3D | Transferase(Phosphotransferase) domain 1 | 278 | 310 | - | - | |
Cma01g00554 | 359 | Gene3D | Phosphorylase Kinase; domain 1 | 57 | 157 | - | - | |
Cma01g00554 | 359 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 13 | 277 | 344 | - | - | |
Cma01g00554 | 359 | SUPERFAMILY | Protein kinase-like (PK-like) | 77 | 306 | IPR011009 | - | |
Cma01g00554 | 359 | Gene3D | Transferase(Phosphotransferase) domain 1 | 158 | 277 | - | - | |
Cma01g00554 | 359 | ProSiteProfiles | Protein kinase domain profile. | 74 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00554 | 359 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 277 | 344 | - | - | |
Cma01g00554 | 359 | Pfam | Protein kinase domain | 77 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00554 | 359 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 13 | 52 | 277 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00554 | Cma-Chr1:2885039 | Cma15g01248 | Cma-Chr15:7927658 | 5.13E-140 | dispersed | |
Cma01g00554 | Cma-Chr1:2885039 | Cma01g00558 | Cma-Chr1:2904448 | 7.42E-135 | proximal | |
Cma01g00554 | Cma-Chr1:2885039 | Cma13g00166 | Cma-Chr13:1268019 | 2.17E-174 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68256 | PF00069 | Pkinase | 4.30E-55 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00554 | K04371 | K14512 | qsu:111988666 | 416.772 |