Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00558 ATGAAGACGACGACGGAAGCCGTTGACAAAAGGAAAATGAATTTGGACCGTCGATTAAAGGCGGCTGAAATGTTATCCGTCCGATCCTCCGTGAGAAGCGCGTCGAAGAATATGGCTGATGTTGGTCAGAACAATACCGGTGATTTTCCTGCTGTTCCTACCCATGGCGGTCAATATGTGCAGTACAATATCTTCCGGAATCCGTTTGAAATCACCTCCAAATATCGTCCGCCTATCATGCCTATAGGTCGCGGCGCCTACGGAATCGTTTGTTCGGTTTTGAATTCAGAGACCAACGAGATGGTTGCGGTTAAGAAGATTGCCAACGCGTTTGATAATCATATGGATGCGAAGCGGACGCTCCGTGAGATCAAGCTTCTCCGGCATTTGGATCACGAAAATGTAATAGGCATTAGAGATGTGATTCCTCCACCTCTGCGGAGAGAATTCAGTGATGTCTACATTTCCACTGAACTAATGGACACCGATCTTCACCAAATAATCCGCTCGAACCAAACTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTTAAATACATACATTCTGCAAATGTCATTCATCGGGACTTGAAACCGAGCAATCTACTGCTTAATGCGAACTGTGATCTTAAAATTTGCGACTTTGGTCTTGCTCGTCCAACTTCAGAAAATGAAAGCATGACAGAATATGTTGTTACCAGATGGTATAGGGCACCTGAGTTACTGTTGAACTCTGATTATACAGCTGCTATTGATATATGGTCTGTTGGTTGCATCTATTTGGAGCTTATGAACAGAAGGCCTCTATTTCCAGGCAGGGATCATGTGCATCAGATGCGTTTACTGACTGAGCTTCTTGGCACACCAACCGAATCGGATCTTGGTTTTATTCGAAACGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACAGTTTTCCCTCATGTTCATCCTTTGGCAATTGATCTTGTGGATAAAATGTTGACGTTTGATCCAACCAGGAGAATTACTGTTGAAGAAGCGTTGGCACATCCATACCTAGAGAGATTGCACGACGTAGCCGATGAGCCAGTTTGCCCCGAGCCATTCTCGTTCGAGTTTGAGCAACAATACTTGGATGAAGAGCAGATGAAGGAGATGATTTACAGAGAAGCATTGGCACTCAATCCAGAATTTGCATGA 1224 44.36 MKTTTEAVDKRKMNLDRRLKAAEMLSVRSSVRSASKNMADVGQNNTGDFPAVPTHGGQYVQYNIFRNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFSDVYISTELMDTDLHQIIRSNQTLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENESMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIYLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTRRITVEEALAHPYLERLHDVADEPVCPEPFSFEFEQQYLDEEQMKEMIYREALALNPEFA 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2904448 2907585 + CmaCh01G005580.1 Cma01g00558 286251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00558 407 Gene3D Phosphorylase Kinase; domain 1 59 398 - -
Cma01g00558 407 Gene3D Transferase(Phosphotransferase) domain 1 160 388 - -
Cma01g00558 407 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 51 406 - -
Cma01g00558 407 Pfam Protein kinase domain 81 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00558 407 SMART serkin_6 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00558 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cma01g00558 407 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00558 407 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 51 406 - -
Cma01g00558 407 SUPERFAMILY Protein kinase-like (PK-like) 80 369 IPR011009 -
Cma01g00558 407 ProSitePatterns MAP kinase signature. 111 214 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma01g00558 407 CDD STKc_TEY_MAPK 69 404 - -
Cma01g00558 407 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00558 Cma-Chr1:2904448 Cma05g00431 Cma-Chr5:1956044 0 dispersed
Cma01g00554 Cma-Chr1:2885039 Cma01g00558 Cma-Chr1:2904448 7.42E-135 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68257 PF00069 Pkinase 1.20E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00558 K20536 - csv:101202796 731.095