Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00579 | ATGGGTGGAGACGGGGAAAACTATGGGAAAAAGGAACCTTTTGCTGCTAACATCTCGAATAACGAAACTTATCCTGCCTGGGCCACGGATGTTCGAGAATGCCTAGAGAAGTACCAGGTGAACCCTGATCTCGGATTATCTTCTGAGGAGGTTGAGAAACAGAGAAAGATCTACGGTTCCAATGAATTGGAGAAGCATGAGGGTACATCAATCTTTAAACTAGTTTTGGAACAATTTAATGATACACTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGTGAGGAAGGAGGTGAGATGGAGATTACAGCATTTGTGGAGCCTATAGTTATTTTCTTGATATTGATTGTCAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCTCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTAATACGAAATGGTAAACGCGTTTCAATTGTTTCCAAGGACATTGTTCCTGGTGATATAGTTGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGGTTAATCAGCTCAACTTTTCGGGTTGAGCAGGGGTCCTTGACTGGTGAGAGCGAAGCGGTGAGCAAGACTGCTAAGGCTGTGCCAGAAGATACAGACATACAAGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTCAATGGAAATTGTATTTTCCTTGTTACCCAGACAGGGATGAGCACTGAACTAGGACAGGTTCATTCTCAGATACAAGAAGCATCCCAGAGTGAAGATGATACACCATTGAAGAAGAAGTTGAATGAGTTTGGAGAGCTTTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATATGTTGATGGGTGGCCAGCAAATTTCAAGTTCTCATTTGAGAAATGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTAGCTGCAATTCCTGAAGGTTTGCCTGCAGTCATAACTACATGCTTGGCACTTGGCACTCGGAAAATGGCCCAAAAGAATGCTCTTGTTCGGAAGCTTCCCAGTGTTGAAACTCTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGTACACTAACAACTAATCAGATGGCTGTAGCGAAAATTGTGGCTCTCGGTTCTCGTGTTGGTACTCTGCGAGCCTTTGATGTGGAAGGGACTACATATGATCCTTCTGATGGAAAAATAATTGGTTGGCTTGGAGGTCAACTGGATGCTAATCTGCAAATGTTGGCAAAGATTGCCGCTGTCTGTAATGATGCAGTTGTTGAAAAATCTGGTCATCATTTTGTTGTGAATGGAATGCCTACTGAAGCAGCATTGAAGGTTCTTGTGGAAAAGATGGGTCTTCCTGAAGGATATGACTCCACATCAGCTTCCATTGGGGATGTCCTGCGATGCTGCGACGTTTGGAATAAGAACGAGCAACGCATTGCTACTCTAGAGTTTGACCGAGATCGTAAATCAATGGGAGTTATTACAAATGCTAGCTCAGGAAAGAAGTCATTACTCGTGAAGGGTGCTGTTGAAAATCTTTTGGAACGGAGTTCATTTATTCAACTTATTGATGGATCTATTGTGAAGTTGGACTCAGACTCAAAAACCCACCTCTTAAGTTACTTGCGTGAGATGTCATCAAGTGCATTAAGGTGTTTAGGTTTTGCATACAAGGAAAACCTTCCAGAATTTTCCACTTACAATAGTGGTGACGAAGAACATCCAGCACATCGGCTTTTACTTGACCCGTCCAATTACTCTACAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGATTAAGGGATCCTCCCCGAAAAGAGGTTCATCAAGCTATCGAAGACTGTAAAGCTGCTGGTATTCGTGTCATGGTTATCACAGGGGACAACCAGAACACAGCTGAAGCTGTATGTCGAGAAATTGGTGTATTTGGACAACGTGAAGCTATAAGTTCCAGAAGTTTAACCGGAAAAGAGTTCATGGCAATGAGCCGGGAGGATCAAAAATCCCATTTAAGACAAGATAGAGGACTTCTTTTCTCAAGGGCTGAGCCAAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCCATGACAGGAGATGGAGTCAATGATGCACCTGCTTTGAAGTTGGCTGATATTGGGATTGCGATGGGCATTGCTGGGACAGAGGTTGCGAAGGAAGCCTCCGACATGGTTCTGGCAGATGACAATTTTAGTACAATAGTTGCAGCAGTTGGTGAAGGCAGATCCATTTACGACAATATGAAGGCATTTATCAGGTACATGATTTCCTCAAACATCGGCGAGGTTGCGTCGATTTTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTCGTTACAGATGGACCTCCAGCTACTGCATTGGGATTTAATCCACCCGACACCAATATAATGAAGAAACCGCCTAGAAGAAGTGATGACTCGTTGATCACAGCCTGGATTTTGTTCCGCTATTTGGTTATTGGACTTTACGTAGGGATAGCAACTGTAGGAGTATTTATTATTTGGTATACACATGCTTCGTTCATGGGTATTGACCTGTCCGGAGATGGTCACAGTCTGGTCTCATACTCTCAGCTCGCAAACTGGGATCAGTGCCCGACTTGGGAAGGGTTTACTGTGTCGCCTTTCATGGCTGGGGACCAAGTCTTCAGCTTCGATTCAGATCCATGCGACTACTTCCGTTCAGGCAAGATCAAGGCTTCAACTCTCTCACTCTCCGTTTTGGTCGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCAGAGGATGGAAGCTTGTTCATAATGCCCCCATGGGTTAACCCGTGGCTGCTCCTCGCCATGTCTGTTTCATTTGGCTTGCATTTCTTGATCCTCTATGTGCCATTCCTCGCCCCAATTTTCGGCATTGTCCCCCTCTCCTTGAACGAATGGCTCTTGGTTCTGGCTGTGGCATTGCCTGTGATCTTAATCGATGAGATCTTGAAATTCGTGGGAAGGCTTACAAGCGGGTTGAGGACATCTCGCCCGAGCAGCAGATTGTTGAAGCAGAAATCAGACTAA | 3198 | 44.03 | MGGDGENYGKKEPFAANISNNETYPAWATDVRECLEKYQVNPDLGLSSEEVEKQRKIYGSNELEKHEGTSIFKLVLEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPIVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRVSIVSKDIVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCIFLVTQTGMSTELGQVHSQIQEASQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPSDGKIIGWLGGQLDANLQMLAKIAAVCNDAVVEKSGHHFVVNGMPTEAALKVLVEKMGLPEGYDSTSASIGDVLRCCDVWNKNEQRIATLEFDRDRKSMGVITNASSGKKSLLVKGAVENLLERSSFIQLIDGSIVKLDSDSKTHLLSYLREMSSSALRCLGFAYKENLPEFSTYNSGDEEHPAHRLLLDPSNYSTIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAVCREIGVFGQREAISSRSLTGKEFMAMSREDQKSHLRQDRGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDTNIMKKPPRRSDDSLITAWILFRYLVIGLYVGIATVGVFIIWYTHASFMGIDLSGDGHSLVSYSQLANWDQCPTWEGFTVSPFMAGDQVFSFDSDPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLFIMPPWVNPWLLLAMSVSFGLHFLILYVPFLAPIFGIVPLSLNEWLLVLAVALPVILIDEILKFVGRLTSGLRTSRPSSRLLKQKSD | 1065 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3004890 | 3011006 | - | CmaCh01G005790.1 | Cma01g00579 | 286272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00579 | 1065 | SMART | Cation_ATPase_N_a_2 | 25 | 99 | IPR004014 | - | |
Cma01g00579 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 199 | 213 | - | - | |
Cma01g00579 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 380 | 394 | - | - | |
Cma01g00579 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 624 | 635 | - | - | |
Cma01g00579 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 646 | 656 | - | - | |
Cma01g00579 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 732 | 751 | - | - | |
Cma01g00579 | 1065 | PRINTS | P-type cation-transporting ATPase superfamily signature | 756 | 768 | - | - | |
Cma01g00579 | 1065 | SUPERFAMILY | Calcium ATPase, transduction domain A | 149 | 259 | IPR008250 | - | |
Cma01g00579 | 1065 | Pfam | Cation transporting ATPase, C-terminus | 817 | 1043 | IPR006068 | - | |
Cma01g00579 | 1065 | Pfam | haloacid dehalogenase-like hydrolase | 377 | 746 | - | - | |
Cma01g00579 | 1065 | Gene3D | - | 390 | 631 | IPR023299 | GO:0000166 | |
Cma01g00579 | 1065 | Pfam | E1-E2 ATPase | 147 | 360 | - | - | |
Cma01g00579 | 1065 | SFLD | p-type atpase | 361 | 784 | IPR044492 | - | |
Cma01g00579 | 1065 | PANTHER | RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED | 9 | 1057 | - | - | |
Cma01g00579 | 1065 | Gene3D | - | 77 | 1045 | - | - | |
Cma01g00579 | 1065 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 25 | 1045 | IPR023298 | - | |
Cma01g00579 | 1065 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 382 | 388 | IPR018303 | - | |
Cma01g00579 | 1065 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 387 | 628 | IPR023299 | GO:0000166 | |
Cma01g00579 | 1065 | Gene3D | - | 45 | 262 | - | - | |
Cma01g00579 | 1065 | SUPERFAMILY | HAD-like | 378 | 836 | IPR036412 | - | |
Cma01g00579 | 1065 | Pfam | Cation transporter/ATPase, N-terminus | 27 | 94 | IPR004014 | - | |
Cma01g00579 | 1065 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 319 | 401 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma01g00579 | 1065 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 706 | 816 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma01g00579 | 1065 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 118 | 307 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma01g00579 | 1065 | SFLD | Haloacid Dehalogenase | 361 | 784 | - | - | |
Cma01g00579 | 1065 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 9 | 1057 | - | - | |
Cma01g00579 | 1065 | Gene3D | - | 377 | 777 | IPR023214 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00579 | Cma13g00147 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00579 | Cma-Chr1:3004890 | Cma12g00603 | Cma-Chr12:3149699 | 0 | dispersed | |
Cma01g00579 | Cma-Chr1:3004890 | Cma13g00147 | Cma-Chr13:1081823 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00579 | K01537 | - | csv:101206729 | 1921.36 |