Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00595 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCCCCCAATTGGCATCAGCAATCAAATCATCATCATCATCATCTTCAGATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTTCCGTCTCATGTCGGTGCCACCGGGATTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCTGAGACTGCCCTCAAATGTCCTCGATGTGATTCCTCCAACACCAAGTTCTGTTACTTCAACAACTATAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGTGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCAAAATCTCCGGCCACCGGGAACGAAACAAGTAACAATAACAATTCGAACTCACCCACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGAACCGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAAGCTGGAGACATCGGAAACAGCACCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGGGTTGTACCCATTTCAAATTAGTGAAGGCGGCAGCAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATCAATTTTGGAACGGTGGAAATGGGTGGACAGATCTTTCGGGTATCAGTTCTTCGTCAAGTGGCCATATTTCTTGTGACTTCAATCATTGA 969 45.3 MDFSSVPLYLDPPPNWHQQSNHHHHHLQIPNNGSPHHLQPSSTALPSHVGATGIGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQAGDIGNSTLLNHHWRNSQSFPLSADLETPTGLYPFQISEGGSNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNQFWNGGNGWTDLSGISSSSSGHISCDFNH 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3123663 3124927 - CmaCh01G005950.1 Cma01g00595 286288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00595 322 MobiDBLite consensus disorder prediction 25 49 - -
Cma01g00595 322 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Cma01g00595 322 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Cma01g00595 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 314 IPR045174 GO:0003700|GO:0006355
Cma01g00595 322 MobiDBLite consensus disorder prediction 14 53 - -
Cma01g00595 322 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Cma01g00595 322 MobiDBLite consensus disorder prediction 122 163 - -
Cma01g00595 322 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 19 314 - -
Cma01g00595 322 MobiDBLite consensus disorder prediction 140 163 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00595 Cma02g00812 CCT
Cma01g00595 Cma02g00812 ECH
Cma01g00595 Cma13g00133 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00595 Cma-Chr1:3123663 Cma04g01188 Cma-Chr4:6067895 3.66E-58 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma13g00133 Cma-Chr13:909757 5.83E-104 wgd
Cma01g00595 Cma-Chr1:3123663 Cma14g00157 Cma-Chr14:642222 5.23E-66 wgd
Cma01g00595 Cma-Chr1:3123663 Cma02g00812 Cma-Chr2:4795103 3.64E-47 wgd
Cma01g00595 Cma-Chr1:3123663 Cma20g00412 Cma-Chr20:1971141 6.90E-48 wgd
Cma01g00595 Cma-Chr1:3123663 Cma04g00219 Cma-Chr4:1060358 3.78E-62 wgd
Cma01g00595 Cma-Chr1:3123663 Cma06g00304 Cma-Chr6:1443954 5.99E-53 wgd
Cma01g00595 Cma-Chr1:3123663 Cma07g00977 Cma-Chr7:4730534 3.71E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34270 PF02701 zf-Dof 2.50E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00595 - - csv:101218334 462.225