Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00595 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCCCCCAATTGGCATCAGCAATCAAATCATCATCATCATCATCTTCAGATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTTCCGTCTCATGTCGGTGCCACCGGGATTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCTGAGACTGCCCTCAAATGTCCTCGATGTGATTCCTCCAACACCAAGTTCTGTTACTTCAACAACTATAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGTGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCAAAATCTCCGGCCACCGGGAACGAAACAAGTAACAATAACAATTCGAACTCACCCACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGAACCGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAAGCTGGAGACATCGGAAACAGCACCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGGGTTGTACCCATTTCAAATTAGTGAAGGCGGCAGCAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATCAATTTTGGAACGGTGGAAATGGGTGGACAGATCTTTCGGGTATCAGTTCTTCGTCAAGTGGCCATATTTCTTGTGACTTCAATCATTGA 969 45.3 MDFSSVPLYLDPPPNWHQQSNHHHHHLQIPNNGSPHHLQPSSTALPSHVGATGIGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQAGDIGNSTLLNHHWRNSQSFPLSADLETPTGLYPFQISEGGSNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNQFWNGGNGWTDLSGISSSSSGHISCDFNH 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3123663 3124927 - CmaCh01G005950.1 Cma01g00595 286288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00595 322 MobiDBLite consensus disorder prediction 25 49 - -
Cma01g00595 322 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Cma01g00595 322 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Cma01g00595 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 314 IPR045174 GO:0003700|GO:0006355
Cma01g00595 322 MobiDBLite consensus disorder prediction 14 53 - -
Cma01g00595 322 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Cma01g00595 322 MobiDBLite consensus disorder prediction 122 163 - -
Cma01g00595 322 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 19 314 - -
Cma01g00595 322 MobiDBLite consensus disorder prediction 140 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00595 - - - csv:101218334 462.225
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00595 Cma02g00812 CCT
Cma01g00595 Cma02g00812 ECH
Cma01g00595 Cma13g00133 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00595 Cma-Chr1:3123663 Cma04g01188 Cma-Chr4:6067895 3.66E-58 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma13g00133 Cma-Chr13:909757 5.83E-104 wgd
Cma01g00595 Cma-Chr1:3123663 Cma14g00157 Cma-Chr14:642222 5.23E-66 wgd
Cma01g00595 Cma-Chr1:3123663 Cma02g00812 Cma-Chr2:4795103 3.64E-47 wgd
Cma01g00595 Cma-Chr1:3123663 Cma20g00412 Cma-Chr20:1971141 6.90E-48 wgd
Cma01g00595 Cma-Chr1:3123663 Cma04g00219 Cma-Chr4:1060358 3.78E-62 wgd
Cma01g00595 Cma-Chr1:3123663 Cma06g00304 Cma-Chr6:1443954 5.99E-53 wgd
Cma01g00595 Cma-Chr1:3123663 Cma07g00977 Cma-Chr7:4730534 3.71E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34270 PF02701 zf-Dof 2.50E-32 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00595 Cma_Chr01 FPKM 16.440382 16.526794 26.495489 27.832577 14.122277 13.951099 14.24538 2.985279 3.194425 3.13136