Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00596 | ATGGAGGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATACCAAAGAGCCAGTCTCTGAGGATACTCTCAAGGCTCTTGTATTGTTGAAAGAAGCCCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCCAGGGGAGCAAGATTTTTCTGGCCGTAGAGAGGGAGCAAATTATGGTCAAATTTCATGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGCACCTGACTCTGAGCTGATGGATGATATCTTTGCCCTTTACAACACAAGCAATGATTCTTCTGTGGATCAAAATCGCCTCAGGAGATTAGCTGAAAAATTACAATTAATTGGAATATCCGAACTTACACAAGAGTCCATAGCTTTGCATGAGATGGTTACTGCTAGTGGTGGTGATCCAGGTGAGAGCATTGAGACGATGTTAGGGCTGCTGAAGAAAATAAAAGATTTTGTACAAACGGAGAACCTTGAAACGGATACTCCTGGCAGAGACAAGAGTCCTCCTGCTAGTTGTAGTGGACAAATTTCAAATGAGAAAAATAATACGGCCCCAATTATACCAGAAGATTTTCGCTGTCCCATATCCCTGGAGTTGATGAGAGATCCTGTTATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATCGAGAAATGGTTTGAAGCAGGGCACGGAACATGTCCAAAGACACAACAGAACCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCACCATCTTGCTCGGCTGCTGAACGCACGAAGATTGATATTCTGCTTTGCAAACTTGCATCTGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAGCGAAATGCAGATAATCGTGTTGCAATTGCTGAGGCTGGTGCAATACCTCTTCTTGTTGGCCTTCTTTCAACTCCAGATTCTCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCTTCTGGGGCAGTTCCTGGTATTGTGCTCGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAGAATAAAGTTAGAATTGGTGCCTCTGGAGCTATCCCGCCGCTTGTTATGCTGCTTAGCCAAGGCACTCAAAGAGGCAAGAAAGATGCCGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGATCCGGAATGGTGGACGAAGCCTTAGCCATCTTGGCAATACTCTCTAGCCATCCCGAAGGGAAAGCAGTGATCGGATCTGCAAAGGCAGTGCCAGTTTTGGTAGATGTTATAGGGACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCATCTTTGCTCTGGAGATGAACAACACCTATTAGAGGCCAGGGAGCTTGGAGTGATGAGTTCATTGATAGATTTGGCACAAAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGGTTGAACGAATGAACCGACTCTTAGAGCACACGGAGGAGACTCGGGTGCAAGCACCAGAGTCTCGACCTCAAAACCAGCCATCCCTATCGAGCTCTACGACGGAAGTCGCTGGTAGCTGA | 1995 | 46.97 | MEEDNGALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDTKEPVSEDTLKALVLLKEALESAKKLLRFGSQGSKIFLAVEREQIMVKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELMDDIFALYNTSNDSSVDQNRLRRLAEKLQLIGISELTQESIALHEMVTASGGDPGESIETMLGLLKKIKDFVQTENLETDTPGRDKSPPASCSGQISNEKNNTAPIIPEDFRCPISLELMRDPVIVSTGQTYERSCIEKWFEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSPSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVMLLSQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGSGMVDEALAILAILSSHPEGKAVIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLLEARELGVMSSLIDLAQNGTDRGKRKAAQLVERMNRLLEHTEETRVQAPESRPQNQPSLSSSTTEVAGS | 664 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3130763 | 3135320 | - | CmaCh01G005960.1 | Cma01g00596 | 286289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00596 | 664 | Gene3D | - | 7 | 117 | IPR036537 | GO:0007166 | |
Cma01g00596 | 664 | CDD | RING-Ubox_PUB | 262 | 304 | IPR045210 | - | |
Cma01g00596 | 664 | PANTHER | U BOX DOMAIN-CONTAINING | 6 | 644 | - | - | |
Cma01g00596 | 664 | MobiDBLite | consensus disorder prediction | 643 | 664 | - | - | |
Cma01g00596 | 664 | SMART | arm_5 | 385 | 425 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | SMART | arm_5 | 591 | 631 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | SMART | arm_5 | 467 | 507 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | SMART | arm_5 | 549 | 589 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | SMART | arm_5 | 426 | 466 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | SMART | arm_5 | 508 | 548 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | MobiDBLite | consensus disorder prediction | 229 | 254 | - | - | |
Cma01g00596 | 664 | SUPERFAMILY | RING/U-box | 247 | 334 | - | - | |
Cma01g00596 | 664 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842|GO:0016567 | |
Cma01g00596 | 664 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | SUPERFAMILY | ARM repeat | 356 | 629 | IPR016024 | - | |
Cma01g00596 | 664 | MobiDBLite | consensus disorder prediction | 237 | 254 | - | - | |
Cma01g00596 | 664 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842|GO:0016567 | |
Cma01g00596 | 664 | Coils | Coil | 619 | 639 | - | - | |
Cma01g00596 | 664 | MobiDBLite | consensus disorder prediction | 635 | 664 | - | - | |
Cma01g00596 | 664 | Pfam | Armadillo/beta-catenin-like repeat | 468 | 506 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | Pfam | Armadillo/beta-catenin-like repeat | 550 | 589 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | Pfam | Armadillo/beta-catenin-like repeat | 385 | 424 | IPR000225 | GO:0005515 | |
Cma01g00596 | 664 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842|GO:0016567 | |
Cma01g00596 | 664 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 331 | IPR013083 | - | |
Cma01g00596 | 664 | Gene3D | - | 342 | 649 | IPR011989 | - | |
Cma01g00596 | 664 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 6 | 644 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00596 | Cma20g00410 | CCT | |
Cma01g00596 | Cma13g00132 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00596 | Cma-Chr1:3130763 | Cma18g00906 | Cma-Chr18:7786736 | 0 | dispersed | |
Cma03g00505 | Cma-Chr3:4940307 | Cma01g00596 | Cma-Chr1:3130763 | 1.16E-58 | dispersed | |
Cma09g00780 | Cma-Chr9:3770598 | Cma01g00596 | Cma-Chr1:3130763 | 5.86E-06 | dispersed | |
Cma13g00905 | Cma-Chr13:7247896 | Cma01g00596 | Cma-Chr1:3130763 | 1.21E-41 | dispersed | |
Cma18g00710 | Cma-Chr18:6460697 | Cma01g00596 | Cma-Chr1:3130763 | 5.31E-51 | dispersed | |
Cma18g01080 | Cma-Chr18:8910909 | Cma01g00596 | Cma-Chr1:3130763 | 7.50E-20 | dispersed | |
Cma01g00596 | Cma-Chr1:3130763 | Cma13g00132 | Cma-Chr13:899216 | 0 | wgd | |
Cma01g00596 | Cma-Chr1:3130763 | Cma02g00810 | Cma-Chr2:4791084 | 8.83E-15 | wgd | |
Cma01g00596 | Cma-Chr1:3130763 | Cma20g00410 | Cma-Chr20:1964270 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00596 | - | - | csv:101218572 | 1097.8 |