Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00596 ATGGAGGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATACCAAAGAGCCAGTCTCTGAGGATACTCTCAAGGCTCTTGTATTGTTGAAAGAAGCCCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCCAGGGGAGCAAGATTTTTCTGGCCGTAGAGAGGGAGCAAATTATGGTCAAATTTCATGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGCACCTGACTCTGAGCTGATGGATGATATCTTTGCCCTTTACAACACAAGCAATGATTCTTCTGTGGATCAAAATCGCCTCAGGAGATTAGCTGAAAAATTACAATTAATTGGAATATCCGAACTTACACAAGAGTCCATAGCTTTGCATGAGATGGTTACTGCTAGTGGTGGTGATCCAGGTGAGAGCATTGAGACGATGTTAGGGCTGCTGAAGAAAATAAAAGATTTTGTACAAACGGAGAACCTTGAAACGGATACTCCTGGCAGAGACAAGAGTCCTCCTGCTAGTTGTAGTGGACAAATTTCAAATGAGAAAAATAATACGGCCCCAATTATACCAGAAGATTTTCGCTGTCCCATATCCCTGGAGTTGATGAGAGATCCTGTTATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATCGAGAAATGGTTTGAAGCAGGGCACGGAACATGTCCAAAGACACAACAGAACCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCACCATCTTGCTCGGCTGCTGAACGCACGAAGATTGATATTCTGCTTTGCAAACTTGCATCTGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAGCGAAATGCAGATAATCGTGTTGCAATTGCTGAGGCTGGTGCAATACCTCTTCTTGTTGGCCTTCTTTCAACTCCAGATTCTCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCTTCTGGGGCAGTTCCTGGTATTGTGCTCGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAGAATAAAGTTAGAATTGGTGCCTCTGGAGCTATCCCGCCGCTTGTTATGCTGCTTAGCCAAGGCACTCAAAGAGGCAAGAAAGATGCCGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGATCCGGAATGGTGGACGAAGCCTTAGCCATCTTGGCAATACTCTCTAGCCATCCCGAAGGGAAAGCAGTGATCGGATCTGCAAAGGCAGTGCCAGTTTTGGTAGATGTTATAGGGACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCATCTTTGCTCTGGAGATGAACAACACCTATTAGAGGCCAGGGAGCTTGGAGTGATGAGTTCATTGATAGATTTGGCACAAAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGGTTGAACGAATGAACCGACTCTTAGAGCACACGGAGGAGACTCGGGTGCAAGCACCAGAGTCTCGACCTCAAAACCAGCCATCCCTATCGAGCTCTACGACGGAAGTCGCTGGTAGCTGA 1995 46.97 MEEDNGALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDTKEPVSEDTLKALVLLKEALESAKKLLRFGSQGSKIFLAVEREQIMVKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELMDDIFALYNTSNDSSVDQNRLRRLAEKLQLIGISELTQESIALHEMVTASGGDPGESIETMLGLLKKIKDFVQTENLETDTPGRDKSPPASCSGQISNEKNNTAPIIPEDFRCPISLELMRDPVIVSTGQTYERSCIEKWFEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSPSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVMLLSQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGSGMVDEALAILAILSSHPEGKAVIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLLEARELGVMSSLIDLAQNGTDRGKRKAAQLVERMNRLLEHTEETRVQAPESRPQNQPSLSSSTTEVAGS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3130763 3135320 - CmaCh01G005960.1 Cma01g00596 286289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00596 664 Gene3D - 7 117 IPR036537 GO:0007166
Cma01g00596 664 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cma01g00596 664 PANTHER U BOX DOMAIN-CONTAINING 6 644 - -
Cma01g00596 664 MobiDBLite consensus disorder prediction 643 664 - -
Cma01g00596 664 SMART arm_5 385 425 IPR000225 GO:0005515
Cma01g00596 664 SMART arm_5 591 631 IPR000225 GO:0005515
Cma01g00596 664 SMART arm_5 467 507 IPR000225 GO:0005515
Cma01g00596 664 SMART arm_5 549 589 IPR000225 GO:0005515
Cma01g00596 664 SMART arm_5 426 466 IPR000225 GO:0005515
Cma01g00596 664 SMART arm_5 508 548 IPR000225 GO:0005515
Cma01g00596 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Cma01g00596 664 MobiDBLite consensus disorder prediction 229 254 - -
Cma01g00596 664 SUPERFAMILY RING/U-box 247 334 - -
Cma01g00596 664 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cma01g00596 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Cma01g00596 664 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Cma01g00596 664 MobiDBLite consensus disorder prediction 237 254 - -
Cma01g00596 664 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cma01g00596 664 Coils Coil 619 639 - -
Cma01g00596 664 MobiDBLite consensus disorder prediction 635 664 - -
Cma01g00596 664 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Cma01g00596 664 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Cma01g00596 664 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Cma01g00596 664 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cma01g00596 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
Cma01g00596 664 Gene3D - 342 649 IPR011989 -
Cma01g00596 664 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 644 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00596 Cma20g00410 CCT
Cma01g00596 Cma13g00132 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00596 Cma-Chr1:3130763 Cma18g00906 Cma-Chr18:7786736 0 dispersed
Cma03g00505 Cma-Chr3:4940307 Cma01g00596 Cma-Chr1:3130763 1.16E-58 dispersed
Cma09g00780 Cma-Chr9:3770598 Cma01g00596 Cma-Chr1:3130763 5.86E-06 dispersed
Cma13g00905 Cma-Chr13:7247896 Cma01g00596 Cma-Chr1:3130763 1.21E-41 dispersed
Cma18g00710 Cma-Chr18:6460697 Cma01g00596 Cma-Chr1:3130763 5.31E-51 dispersed
Cma18g01080 Cma-Chr18:8910909 Cma01g00596 Cma-Chr1:3130763 7.50E-20 dispersed
Cma01g00596 Cma-Chr1:3130763 Cma13g00132 Cma-Chr13:899216 0 wgd
Cma01g00596 Cma-Chr1:3130763 Cma02g00810 Cma-Chr2:4791084 8.83E-15 wgd
Cma01g00596 Cma-Chr1:3130763 Cma20g00410 Cma-Chr20:1964270 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00596 - - csv:101218572 1097.8