Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00609 ATGGCTACAACGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCCCTGGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAACAATGGGCTGAGCTGTGGTGCCTGTTTCGAAATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCTTCGATTATGATTACGGCCACGAACTTCTGCCCGCCTAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAATCCTCCTCGGCCACATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCTGGTATCGTCCCCGTCGCCTACCGCCGGGTGCCATGCCGGAAGCAAGGGGGGATACGTTACACAATCCACGGGTTCCGGTACTTCAACCTGGTTTTAATCACCAACGTTGCAGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACAGGCTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTAGTGGGCCAGGCCCTTTCATTCAGAGTCACAGGCAGTGACAGAAGGACTTCCACCACCTACAACGTGGCACCCCCTAATTGGCAGTTCGGCCAGACCTTCATCGGCAAGAATTTTAGGGTTTGA 780 55.77 MATTAILLCIASLISTMWSATARIPGVYSGGPWESALATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRYTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTTYNVAPPNWQFGQTFIGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3176629 3178051 - CmaCh01G006090.1 Cma01g00609 286302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00609 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cma01g00609 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cma01g00609 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cma01g00609 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cma01g00609 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cma01g00609 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cma01g00609 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Cma01g00609 259 Gene3D - 20 161 IPR036908 -
Cma01g00609 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Cma01g00609 259 PANTHER EXPANSIN 5 258 - -
Cma01g00609 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cma01g00609 259 SMART dpbb_1 68 155 IPR007112 -
Cma01g00609 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cma01g00609 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cma01g00609 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cma01g00609 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Cma01g00609 259 Gene3D - 166 257 IPR036749 -
Cma01g00609 259 Pfam Lytic transglycolase 68 155 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00609 Cma20g00396 CCT
Cma01g00609 Cma02g00797 CCT
Cma01g00609 Cma20g00396 ECH
Cma01g00609 Cma02g00797 ECH
Cma01g00609 Cma13g00123 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00609 Cma-Chr1:3176629 Cma03g00422 Cma-Chr3:4515929 2.64E-163 dispersed
Cma04g02271 Cma-Chr4:15858946 Cma01g00609 Cma-Chr1:3176629 5.43E-93 dispersed
Cma11g01319 Cma-Chr11:8770107 Cma01g00609 Cma-Chr1:3176629 5.85E-42 dispersed
Cma01g00609 Cma-Chr1:3176629 Cma13g00123 Cma-Chr13:843427 0 wgd
Cma01g00609 Cma-Chr1:3176629 Cma02g00797 Cma-Chr2:4725802 2.03E-167 wgd
Cma01g00609 Cma-Chr1:3176629 Cma20g00396 Cma-Chr20:1904421 2.73E-169 wgd
Cma01g00609 Cma-Chr1:3176629 Cma04g00211 Cma-Chr4:1005461 3.31E-167 wgd
Cma01g00609 Cma-Chr1:3176629 Cma04g01180 Cma-Chr4:6015443 3.61E-137 wgd
Cma01g00609 Cma-Chr1:3176629 Cma07g00999 Cma-Chr7:5154276 2.33E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00609 - - csv:101206662 514.612