Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00616 ATGGACAATCTCCTCGACGATTTCCCCAATTCATGGAATAATTTTCACTACAACCCTCTTCTCTCAAATGGGTTCTTTAACGTCAACCGAGAAATCTTCGACCCTCTTCATCATAATTCGTCGTCGTCGTCGACATCGCCGTCGCTGTCGCCGTCGAGCACGGAGGGTAACTCACCGGATTGTCACGACACCTCAAATACGATGCTAAAGTACATCACGGAGATGCTGTTGGACGAAGAGGAAGATCTCAAAACTAAGCCCTGTATGCTTATTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTAAGAAGTATCCTCCTCCTCCAATCGGCCTTGGCGATTCTACTCAGAATTTTAGCTCTGATTTGGGTTTTTTTAAGGCTGAAGATGAATCTGAATCTTTTAATGGAGATTCCTCTGTTTTTCCCCCTTCTGATAAACCTCTTTTGAGTCAAGATTCCTTGTTTGGGATGCAATATATTTTCCATTTTAGGCAAGGAGCTGTGGAGGCTAGCAAATTTCTTCCTGTTAATGGTAAATTTGGAACCATTGACTTGTATAATGATTCATCTGCTTCTGTTCCTTCTAGGGCTGTTGATTTTTCTTGGCTTGCTGCTGTGGGTGATGCTAGATCCACCCTTCCAAATGGGTTGTTTAGAGAAAAGAAGAATCATCAAAGGGAAGACAGTGATGAGGAGTTGAGAAATACTAAACAATCTGCTACTTTTGCTGATGATAGTTCATTGTCTGAGTTGTTTGATGAACTCTTGCTGTGTAGGGGTGAGAGCCGGCAGTCCCCATCATGGGGTTCGGACGAATCGTCGGAGAACGAATCGAATAAGAAATCGAGAAAGAAAACGAAAGGTAAGAAGAATAGATCTAGGAAGCAAGAGAGTTGTGTGGAAGTTGTGGATTTATGGACATTGTTGATTCAATGTGCTCAAGCTGTTTCAAATTATGATCAGAGGACTGCTAATGAGCTGCTTAATCAAATCAGGCACCATTCTAATCCATCAGGGGATGGAAACCAAAGATTAGCTTATTTCTTTGCTAAGGGCCTCGAGACTCGGCTTGCGGCCGGGACGCCGCTGTATATGCCGTTTGCAAGCAATGAAACCTCTGCTGCTGATATCTTGAAAACTTATCAGATGTTCATCAAGGCATGCCCCTTCCGGCGGATGTCATATTTCTATGCCAATAGAACAATTCTGAAGCTAGCTGAGAATGTAACAAGGCTGCATATTGTTGATTTTGGTATATTATATGGTCTTCAATGGCCTTGCTTAATTCAGCGGCTCTCCAACAGACCTGGTGGACCTCCCAAGCTGAGAATCACAGGGATTGAGCTTCCTCAGCCAGGCTTCCGCCCCGCCGAACGGGTCGAGCAGACTGGACGTCGCCTTGCACATTACTGCAAAAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCTCAGAAATGGGAAACAGTTAAGTATGAGGATCTTAATGTCGATAGAGACGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACCGTAGTTGCAAACAGTCCAAGAGACAAGGTTCTGAAGTTGATTAGGAAAATCAACCCAGATCTGTTCATTCATGAAGTCACCAATGGTTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGAGGCACTCTTTTACTACTCATCGTTATTCGACATGTACGAGGCGACTGTGCCTCGAGATAATCCACAGAGGTATCTATGCGAAAGGGAAATCTTAGGAAGAGATATCATGAACGTTATAGCGTGCGAAGGGCTCGAAAGAGTCGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACTAGGGCCGGGTTCAAGCAAGTGCCATTAGACCAAGAACTGCTGAAGAATGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGCAGTGGATCAGGATGGAGCATGGATGTTACAAGGGTGGAAGGGACGGATCATCGACGGGTTGTCGTGTTGGCTAAGCTGCTGTACTTACGCCCTGCTGAAGAAGAGCTCTTCTGCGAGTAACTTCGAGGGAGATCGTTGGGGGTCTTGGAAGTGGAAGCTGGGAAGGTTCTCTGTGAAGAACATCGCAATTCCAATTCTCGTCCATTTAATGCGAGGTGAGATGGGGATGCAGGCAAGTGCTAATCGGACGAAGAAAATATACAAAATACTGAAGAACTTTACTAGAGTCCTATGCCAATCACGCGCAGACGCTAGCCTAGCCACCACTCAGATCACCGCCGCCGGCCACTGTAGGAACCTCCAAAAAATATCCTTCAAGATCGTCTGGCAGTTGAAAATATTCATTCGCTGGAGCGTCGCGCTTCTTTGCCGCCGCAACCGCCTTTTTCCTCGGTGGCGGCGGTGGCACCTTCGCCGGCTGAATTCGATACTCCTGTCGCTCCGGCGTCCGGTATCCTTCCATCGGATTCCTCTGAATCTGAGAAGTTTTTAA 2526 45.65 MDNLLDDFPNSWNNFHYNPLLSNGFFNVNREIFDPLHHNSSSSSTSPSLSPSSTEGNSPDCHDTSNTMLKYITEMLLDEEEDLKTKPCMLIDCLALQAAEKSFYDVLGKKYPPPPIGLGDSTQNFSSDLGFFKAEDESESFNGDSSVFPPSDKPLLSQDSLFGMQYIFHFRQGAVEASKFLPVNGKFGTIDLYNDSSASVPSRAVDFSWLAAVGDARSTLPNGLFREKKNHQREDSDEELRNTKQSATFADDSSLSELFDELLLCRGESRQSPSWGSDESSENESNKKSRKKTKGKKNRSRKQESCVEVVDLWTLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAAGTPLYMPFASNETSAADILKTYQMFIKACPFRRMSYFYANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSNRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVKYEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDKVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRYLCEREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKNVEKIVNTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCWLSCCTYALLKKSSSASNFEGDRWGSWKWKLGRFSVKNIAIPILVHLMRGEMGMQASANRTKKIYKILKNFTRVLCQSRADASLATTQITAAGHCRNLQKISFKIVWQLKIFIRWSVALLCRRNRLFPRWRRWHLRRLNSILLSLRRPVSFHRIPLNLRSF 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3211473 3218459 + CmaCh01G006160.1 Cma01g00616 286309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00616 841 MobiDBLite consensus disorder prediction 221 247 - -
Cma01g00616 841 MobiDBLite consensus disorder prediction 222 245 - -
Cma01g00616 841 MobiDBLite consensus disorder prediction 269 300 - -
Cma01g00616 841 Pfam GRAS domain family 314 681 IPR005202 -
Cma01g00616 841 MobiDBLite consensus disorder prediction 39 64 - -
Cma01g00616 841 PANTHER SCARECROW-LIKE PROTEIN 30 35 682 - -
Cma01g00616 841 ProSiteProfiles GRAS family profile. 303 682 IPR005202 -
Cma01g00616 841 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 682 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00616 Cma-Chr1:3211473 Cma01g01007 Cma-Chr1:7294187 1.01E-68 dispersed
Cma01g00616 Cma-Chr1:3211473 Cma13g00118 Cma-Chr13:798320 0 wgd
Cma01g00616 Cma-Chr1:3211473 Cma14g00142 Cma-Chr14:584353 0 wgd
Cma01g00616 Cma-Chr1:3211473 Cma02g00793 Cma-Chr2:4707257 0 wgd
Cma01g00616 Cma-Chr1:3211473 Cma20g00394 Cma-Chr20:1888552 6.35E-09 wgd
Cma01g00616 Cma-Chr1:3211473 Cma06g00294 Cma-Chr6:1409245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34271 PF03514 GRAS 5.60E-114 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00616 - - bhj:120083055 1110.13