Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00618 ATGCTTCCTCTTCTTCTCTTATTTGGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTGCCACCAATGGCGCCACCCCAACCACCACCTCCTCCCTCCTGGCTCCATGGGCTGGCCTTACATAGGCGAAACCTTCAAACTCTACACCCAAAACCCCAACTCCTTCTTCTCCATTAGGCAAAAAAGATATGGGGATGTGTTTAAGACACACATATTGGGGTGTCCATGTGTGATGATTTCAAGCCCTGAGGCTGCCAGAGTTGTGCTTGTGAGTAAGGCTCATCTCTTCAAGCCAACATACCCACCAAGCAAAGAGAAAATGATTGGCCCTCAAGCTTTGTTCTTCCACCAAGGCCCTTACCATTCTCGCCTCAAGAAGCTCATCCAAGCCTCCTTTTTGCCCTCTGCTATCAAACCCTCTGTCTCTCAAATTGAGAACATCGTGCTTCGCCTTTTACCCTCTTGGGATAACTCCCAAATCAATACCTTGCAACAAATGAAAAGGTTTGCTTTTGATGTGGCGATGATCTCCGCTTTTGGTGACCAACAAGACTTGGAAATTGAGAGAATTAAACATCTGTACCAATGCCTTGAAAAAGGCTATAATTCTATGCCTCTTGATCTTCCCGGAACGCCTTTTCGTAAAGCAATGAAGGCGAGGAAGTTGCTGAGTGAGACATTGGGGAAATTGATTGAGAAAAGACAGCGGAGCAACGAGTATGGCGGTGGGTTGCTGGCGGTGCTTCTAGGCGGCGACGGCGACGGCGACGGCGAAAAAGTGGAGAAAAATAAGCTGACTGATTCACAAATAGCTGATAACATAATAGGAGTGATCTTTGCAGCTCAAGACACGACAGCCAGTGTTCTAACATGGATTCTCAAGTACTTACATGACGATCACCATCTTCTTGAAGCTGTTAAGAAGGAGCAGGACGCCATATTTGAGGAGAGGGTGAGGGAAGGGGGGCGTGGGCTTACATGGGATGACACGAGGCGCATGGCGTTGACAAGTCGGGTGATCCAAGAAACCCTAAGAACAGCAAGTGTTCTGTCGTTCACGTTCAGAGAGGCAGTGGAAGAGGTGGAGTTCGAAGGTTATTTAATCCCAAGAGGATGGAAAGTTCTTCCGCTGTTCAGAACCATTCATCACTCTGCACATTTCTTCACACACCCCGAGAAGTTTGATCCTTCAAGATTCGAGGTATTACCCCGACCAAACACGTACATGCCATTTGGAAATGGAGTGCACTCATGTCCCGGCAGCGAGATGGCTAAGCTTGAAATCCTCGTTCTTCTCCACCACCTCATCATCGATTACAGATGGAAAGTGGTGGGAGAGGAATCTGGTATACAATACGGTCCATTTCCTGTGCCTAAAGGTGGCTTACCCATTAAAGTATTTTCAAGGAAGAACAAGATTACTTCTTTGAATTGA 1434 47.42 MLPLLLLFGLLLLLLLLLLCHQWRHPNHHLLPPGSMGWPYIGETFKLYTQNPNSFFSIRQKRYGDVFKTHILGCPCVMISSPEAARVVLVSKAHLFKPTYPPSKEKMIGPQALFFHQGPYHSRLKKLIQASFLPSAIKPSVSQIENIVLRLLPSWDNSQINTLQQMKRFAFDVAMISAFGDQQDLEIERIKHLYQCLEKGYNSMPLDLPGTPFRKAMKARKLLSETLGKLIEKRQRSNEYGGGLLAVLLGGDGDGDGEKVEKNKLTDSQIADNIIGVIFAAQDTTASVLTWILKYLHDDHHLLEAVKKEQDAIFEERVREGGRGLTWDDTRRMALTSRVIQETLRTASVLSFTFREAVEEVEFEGYLIPRGWKVLPLFRTIHHSAHFFTHPEKFDPSRFEVLPRPNTYMPFGNGVHSCPGSEMAKLEILVLLHHLIIDYRWKVVGEESGIQYGPFPVPKGGLPIKVFSRKNKITSLN 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3222113 3226955 + CmaCh01G006180.1 Cma01g00618 286311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00618 477 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS P450 superfamily signature 418 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 289 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 337 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 377 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 408 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PRINTS E-class P450 group I signature 418 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 SUPERFAMILY Cytochrome P450 27 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 Pfam Cytochrome P450 32 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506|GO:0016705
Cma01g00618 477 Gene3D Cytochrome P450 22 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00618 477 PANTHER CYTOCHROME P450 26 10 467 - -
Cma01g00618 477 PANTHER ABSCISIC ACID 8'-HYDROXYLASE 2 10 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00618 Cma-Chr1:3222113 Cma04g00601 Cma-Chr4:3033551 0 dispersed
Cma10g00855 Cma-Chr10:4141943 Cma01g00618 Cma-Chr1:3222113 6.39E-71 dispersed
Cma01g00618 Cma-Chr1:3222113 Cma16g00505 Cma-Chr16:2597830 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00618 K09843 - csv:101216531 795.038