Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00625 ATGGAGACGCCCTCAGAGCATTTCTTCTACAACTTCGATCTGCCCGTTTCTTCCCTCGGGTACTTACCCGCCCTGACCGTCCTCCCTAGGAAATTTTCAATATCGAGCTCTGCCTTCCTTTTAAAGCGTCTCCGTCCGCCGAACCACTCTTCTCTTTCATCTGCTCGTTTTCGAATTCCATCGTCCGTCGTCGTTGCCGGCGTGTTCAGAGATTGGAGTAATCGATTGCGGAGATTTGATTTTTTGTTTGTGGTGGCTGGGGGAGGATTGAGAAGGGAAAGGGAAGAAATTAGAGGAAGTAACGGAAATTGTATTGTTTCATTGGTAATGGCGGAGATTTGCTGTAAGGTGATAGGTGAGAGTGAGGTGTCGTCGTCCTGTGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTTGCCGGAGTTGCTCCGTCGGAGACTGATACTGTTGCGAAGCGACAGAAACTGGAGGATCGATCGGCGTCGCTTTCCAGAGACTGTGATAACGCAGTTGAGAACTGTGATTCCGGGGAAGAAGAGACTGTCGGGAGATTTGTGGCCGGAGAAGTTCCGAAGGAGGTGTCGACACCTCTGCATCGGGAATCTCCTATCATTCCTTTAAGCGGAGAGATTCCGAAGTTTGGATTCTCTTCTGTTTGTGGAAGACGGAGAGATATGGAAGACGCGGTGGCCGTTCATCCATCGCTTTGTTTTACAGACAAGGAAGCCACCGATAAGTTGCACTTGTTCGGTGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGATCGACTGCACGAGCTCGTGAAAGAGGAGTTAGATCGGGAAGTGAAAGAAGAGGCTTCCGCCGTGGCGGAAGCTTCGAGGTGGGACGGCACCATGAAGAGAATCTTCCGCCGAATGGACAACGAGGTTGTGGCGCGAAACAATGAAGAGGTTGTGGTTGCGAATTGCAGATGCGAACTGCAGTCACCGGACTGTGATGCCGTTGGATCCACCGCCGTCGTCGCAGTTGTGACGGCGAATAAGATCATCGTTGCTAACTGCGGCGATTCCAGAGCCGTTCTCTGTCGCAACGGGAAGGCCGTTCCTCTCTCATCCGATCACAAGCCGGATCGGCCCGACGAGTTAAACCGGATCGAGGAAGCTGGCGGCCGTGTGATCTATTGGGACGGACCAAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAACTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACAGATCGGACGGTGGAGGACGAGTGCCTAATTCTGGCGAGTGATGGACTTTGGGATGTGGTTCCAAACGAGACGGCGTGCGGAGTTGCGAGCATGTGTCTCCGGGGAAAAACAGAAGCTCGGTCGCCGGGGTCGCCGCCCGTGGCGGTGGAGACGGCGGTGGAAAGGGTGGGGACGGAGAGGGCGGACAAGGCCTGCAACGATGCGTCGGTACTGCTGACGAAGCTGGCGTTAGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTAG 1596 54.26 METPSEHFFYNFDLPVSSLGYLPALTVLPRKFSISSSAFLLKRLRPPNHSSLSSARFRIPSSVVVAGVFRDWSNRLRRFDFLFVVAGGGLRREREEIRGSNGNCIVSLVMAEICCKVIGESEVSSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVAKRQKLEDRSASLSRDCDNAVENCDSGEEETVGRFVAGEVPKEVSTPLHRESPIIPLSGEIPKFGFSSVCGRRRDMEDAVAVHPSLCFTDKEATDKLHLFGVYDGHGCSHVAMRCKDRLHELVKEELDREVKEEASAVAEASRWDGTMKRIFRRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAVVTANKIIVANCGDSRAVLCRNGKAVPLSSDHKPDRPDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITDRTVEDECLILASDGLWDVVPNETACGVASMCLRGKTEARSPGSPPVAVETAVERVGTERADKACNDASVLLTKLALARHSTDNVSVVVVDLKRDT 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3268907 3271220 - CmaCh01G006250.1 Cma01g00625 286318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00625 531 SUPERFAMILY PP2C-like 218 528 IPR036457 -
Cma01g00625 531 PANTHER PROTEIN PHOSPHATASE 2C 37 154 530 - -
Cma01g00625 531 Gene3D - 213 531 IPR036457 -
Cma01g00625 531 SMART PP2C_4 209 525 IPR001932 -
Cma01g00625 531 ProSitePatterns PPM-type phosphatase domain signature. 257 265 IPR000222 GO:0043169
Cma01g00625 531 Pfam Protein phosphatase 2C 221 497 IPR001932 -
Cma01g00625 531 Coils Coil 161 181 - -
Cma01g00625 531 ProSiteProfiles PPM-type phosphatase domain profile. 221 527 IPR001932 -
Cma01g00625 531 PANTHER ALPHABET, ISOFORM E-RELATED 154 530 - -
Cma01g00625 531 CDD PP2Cc 221 527 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00625 Cma-Chr1:3268907 Cma15g00106 Cma-Chr15:484972 3.80E-119 dispersed
Cma14g01254 Cma-Chr14:9939265 Cma01g00625 Cma-Chr1:3268907 7.72E-68 dispersed
Cma17g00767 Cma-Chr17:6169858 Cma01g00625 Cma-Chr1:3268907 4.02E-08 dispersed
Cma01g00625 Cma-Chr1:3268907 Cma18g01202 Cma-Chr18:9526783 7.11E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00625 K14497 - csv:101206871 637.106