Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00627 ATGGCGGAGGAGGAAGTGCCGATTTTAAGAACAGAGCATTCGCTTGATGTTTTGATTCCAGTACTTGCTAAGAAGAGGAATGTTTCTATCCCCAATCCCCCGGATGTAAACTGTTGTCGTTCTGGCTGTCCGTTTTCTGGATTAGAACATAGTAATCTAGAGTCATTAACACGATCGAAGTCCGCTATGAAGCTCGGTGGATTGATATTGTTCTATGTAATCGCTATCATTGTAGAGATCATAGGTGGCTTGAGAGCCAACAGTCTTTCTGTATTGACTGATGCAGCTCACTTGTTGAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCTGTCTGGGTTTCAGGCTGGGCGGCCACACCACAACATTCATTTGGGTTTAATCGCCTTGAAGTTATTGGCGCCCTTGTGTCTGTGCAGCTCATATGGCTGATTTCTGGGTTCTTAATCTACGAGGCAGCCAATCGGATCCTCGGCCACAAGACAAAGGTTAATGGATTGCTCATGTTCGCCATTGCAGCTTTTGGCTTCCTCCTTAACTTAGTTATGGTCATGTGGCTTGGCCATAGCCATAGCCATAGCCATGGCCACTCTCATTCTTGTCATCATGATCACTTGGATCATGACACTGACCATGAGGAGGAGGGACATTCACACAGTTCAAGTTCGAACATAAATCTCCAAGGTGCTTATCTTCATCTCATCTCTGATATGATTCAATCTGTTGGTGTGATGGTTGCTGGAGCTGTTCTATGGCTTAAACCCAACTGGGTCGTGGTGGATTTAATCTGTACTCTTGTGTTTTCTGTTCTTGCTTTAGCTACTACTGTTCCCATGCTTAGACATATAGGTGGTATACTGATGGAAGGAACACCCAAGGAGATAAACATTGAGAGGCTAGAACATGATATCAAGAACATCAAAGGTGTTCTTGCTTTGCATGACTTGCATATTTGGTCAATAAGTGTCGGCAAAGTTGTGTTGTGTTGCCATGTTGTAGTTGATCATGGAGTTTGTGTTAGGGATACAATTTCTAAGATTAGGAACCTCTGTGAAAAGAGATACAATATAGTTCATACCACCATTCAAGTAGAGTAG 1098 43.35 MAEEEVPILRTEHSLDVLIPVLAKKRNVSIPNPPDVNCCRSGCPFSGLEHSNLESLTRSKSAMKLGGLILFYVIAIIVEIIGGLRANSLSVLTDAAHLLSDVAGFSVSLFAVWVSGWAATPQHSFGFNRLEVIGALVSVQLIWLISGFLIYEAANRILGHKTKVNGLLMFAIAAFGFLLNLVMVMWLGHSHSHSHGHSHSCHHDHLDHDTDHEEEGHSHSSSSNINLQGAYLHLISDMIQSVGVMVAGAVLWLKPNWVVVDLICTLVFSVLALATTVPMLRHIGGILMEGTPKEINIERLEHDIKNIKGVLALHDLHIWSISVGKVVLCCHVVVDHGVCVRDTISKIRNLCEKRYNIVHTTIQVE 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3276791 3277888 + CmaCh01G006270.1 Cma01g00627 286320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00627 365 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 4 365 - -
Cma01g00627 365 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 289 IPR027469 -
Cma01g00627 365 MobiDBLite consensus disorder prediction 200 219 - -
Cma01g00627 365 MobiDBLite consensus disorder prediction 198 223 - -
Cma01g00627 365 Pfam Cation efflux family 69 288 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cma01g00627 365 Gene3D Cation efflux protein transmembrane domain 65 287 IPR027469 -
Cma01g00627 365 TIGRFAM CDF: cation diffusion facilitator family transporter 69 365 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cma01g00627 365 PANTHER METAL TOLERANCE PROTEIN B 4 365 - -
Cma01g00627 365 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 293 365 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00627 Cma-Chr1:3276791 Cma02g00952 Cma-Chr2:5662435 3.10E-46 dispersed
Cma01g00627 Cma-Chr1:3276791 Cma11g01060 Cma-Chr11:5817036 5.20E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00627 K14689 - csv:116403740 475.707