Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00654 ATGACTAACGACGTCGTTTTGCCGTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTCTTTAATTCTCCTCATTTTCGCCTATTTGATTTGGTTTCATTTCCTCGCCCGTACGCTAACCGGTCCAAGAGTCTGGCCGGTCATAGGCAGCCTACCGGCTCTCATCTCGAATCGGCGGAGGTTCCATGACTGGATGGCTGGGAACCTCCGCTCCACAGGCAGCGCCGCCACATACCAAACTTGTACGGTGGCACTTCCATTCTTCGCTAGAAAACAAGGCTTCTACACGGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGACTGGCAAGCGGCTTTTCACGATCTTTTGGGTCAAGGGATTTTCAACAGCGACGGCGAGATTTGGCTGGTTCAGCGGAAGACGGCGGCGCTGGAGTTCACGACGAGGACGCTACGGCAGGCGATGGACCGGTGGGTGAATCGCACGATAAGGACGCGACTTTGGTGCATATTGGATAAGGCGGCGGAGTATAAAACGGCGGTTGATTTGCAGGATTTGTTGCTCCGATTGACTTTTGATAACATTTGTGGGCTCACTTTTGGGAAAGATCCTCAAACTTTGTCGCCGGAATTGCCTGCAACTCCCTTCGCTTTGGCGTTTGATTCCGCCACTGAAGCCACTCTTCACCGCCTTCTTTACCCTAGCATTTTATGGAGGTTAAAGAAGCTTCTCTGCATCGGAATGGAAAGAAGGTTAAAGGAGAGTTTAAAAGTAATAGAGGAATACATAAACGACGCCGTTGCAGCCCGTAAAGAATCCCCCTCAGACGACTTATTATCCCGCTTCATGAAGAAGAAGCACGACGGGGACGGCGACGGCAACCGCTTCTCCGCCGCAGTGCTCCACCGCATCGCCTTAAACTTCGTCCTCGCCGGCCGGGACACATCCTCCGTGGCACTCACGTGGTTCTTTTGGCTCGTAATGAACCACCCGCACGTGGAGGCTACAATCCTCGCCGAAATCTCAACGGTTCTCCGTGAGACACGCGGCGACGATCCACGCCGGTGGATCGAAGAGCCGTTGATGTTCGACGAGGCCGATAAATTGGTGTATTTAAAAGCCGCGCTGGCCGAAACGCTGCGTTTATACCCGTCCGTACCACTGGATTTCAAATACGTCGTGGCTGATGACGTGTTGCCAGATGGCAGTTTTGTGCCAGCCGGTTCGACCGTGACGTATTCGATTTATTCGGTCGGGAGGATGAAGAGCATTTGGGGGGAGGATTGTGGGGAATTTAAACCAGACCGGTGGCTGTCGCCTGACGGGGACCGGTTCGAGGGGCCGAAAGATGGGTATAAATTCGTGGCGTTTAATGCTGGACCGAGAACTTGTTTGGGAAAGGATTTGGCTTATTTGCAAATGAAGTCCATCGCCTCCGCCGTGCTCCTCCGGTATCAGCTGGCGCCGGTTCCCGGTCACCGGGTGGAACAAAAAATGTCTCTTACTCTTTTTACGAAGAATGGGCTTCGGGTTTATTTGCATCCTCGCCGGCTCGGGTAG 1587 53.81 MTNDVVLPFPFPFPFPFPFPFPSLILLIFAYLIWFHFLARTLTGPRVWPVIGSLPALISNRRRFHDWMAGNLRSTGSAATYQTCTVALPFFARKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLVQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPATPFALAFDSATEATLHRLLYPSILWRLKKLLCIGMERRLKESLKVIEEYINDAVAARKESPSDDLLSRFMKKKHDGDGDGNRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEATILAEISTVLRETRGDDPRRWIEEPLMFDEADKLVYLKAALAETLRLYPSVPLDFKYVVADDVLPDGSFVPAGSTVTYSIYSVGRMKSIWGEDCGEFKPDRWLSPDGDRFEGPKDGYKFVAFNAGPRTCLGKDLAYLQMKSIASAVLLRYQLAPVPGHRVEQKMSLTLFTKNGLRVYLHPRRLG 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3418591 3421258 + CmaCh01G006540.1 Cma01g00654 286347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00654 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Cma01g00654 528 PANTHER CYTOCHROME P450 16 526 - -
Cma01g00654 528 SUPERFAMILY Cytochrome P450 34 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 Pfam Cytochrome P450 99 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 Gene3D Cytochrome P450 38 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 16 526 - -
Cma01g00654 528 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g00654 528 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00654 Cma13g00080 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00654 Cma-Chr1:3418591 Cma17g00985 Cma-Chr17:7250967 1.57E-141 dispersed
Cma17g00437 Cma-Chr17:2600115 Cma01g00654 Cma-Chr1:3418591 0 transposed
Cma01g00654 Cma-Chr1:3418591 Cma13g00080 Cma-Chr13:600631 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00654 K15401 - csv:101214516 929.472