Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00661 ATGTTTGACACTGCAGCATCGGCGGCGATATTTCATTCTAGGCTAATTCCTCTGCCGGACTCCGCCGTGGTGGTTAGCCTACTCATGGGTTCAGACGAGCCGCTGGTTTTCCGTGATTTGGAGATCAATGGAGGTGGCGCGACGGCGACGGCGACGGTGAGGTTTGGGTTGGTTAGGGATTTGTGGGGGAATTTACTGAAAGTGGTGTTTGGAACGAAGCTGGCGGTGCTTTTTCCGGCGATCCCTTTGGCGGTGGCGGCGGATTTTTACAACTTTGGAAGCGCATGGACACTTGGTTTGAGCTTACTTGGATTGGCTCACCTTGCAGAACGTGTCAGTTTTTTGACCGAGCAGATTGCATTCTTCACGGGGCCCACAGTTGGAGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTGATATTAGCAATGTTAGCTTTACACCAAAACAAAATCCACATCTTGAAATTCTCCCTTTTGGGTTCCATTCTTTCCAATTTACTTCTAGTTCTTGGCACATCTCTTCTCTTTGGAGGCTTATCCAATCTCAACAAGCAACAAACATTCAACCCAAAAGTCGCGAACGTGAGCTCTTTGGTTTTGCTACTCGGATTGCTATGCCAAATGCTGCCATTGACATCAAGATTTGCATCACCATCAGCTAAATTATGGACAGATTTGTTTGTTCTAGAGCTATCAAGAACTTGCAGCATCATTATGCTCATAGCTTATCTTGTTTATGTGTTCTTCCAGTTGAAAACCCATAACCAATTTTTTGGTCTACCAGAGGAGGAAGAGGATGATGAAGAAATGGCAATAATTGGGCTTTGGAGCTCGTTTGGTTGGCTGGTGGGTATGACCATTGTCATAGCTGTTCTATCACAGTATGTTGTGGATACAATTGAGGAGTCATCACAATCATGGGGAGTTTCGGTGAGCTTTATGAGTATAATTGTGCTGCCGATTATGGGTAATGCAGCTGAGCATGCTGGGTCGGTGCCTTTGAGTGTAGCTGTTGGATGGTGTTTAGGCATCAAAATGGATCTTGATTTTGGTCTCATCCAAACCGCTTCTCTCGCCTTCGCCATCGTAACGTCCGTCTAA 1107 46.07 MFDTAASAAIFHSRLIPLPDSAVVVSLLMGSDEPLVFRDLEINGGGATATATVRFGLVRDLWGNLLKVVFGTKLAVLFPAIPLAVAADFYNFGSAWTLGLSLLGLAHLAERVSFLTEQIAFFTGPTVGGLVNATCGNATELILAMLALHQNKIHILKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNPKVANVSSLVLLLGLLCQMLPLTSRFASPSAKLWTDLFVLELSRTCSIIMLIAYLVYVFFQLKTHNQFFGLPEEEEDDEEMAIIGLWSSFGWLVGMTIVIAVLSQYVVDTIEESSQSWGVSVSFMSIIVLPIMGNAAEHAGSVPLSVAVGWCLGIKMDLDFGLIQTASLAFAIVTSV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3455404 3458824 - CmaCh01G006610.1 Cma01g00661 286354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00661 368 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 334 365 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma01g00661 368 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 50 334 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma01g00661 368 PANTHER VACUOLAR CATION/PROTON EXCHANGER 50 334 - -
Cma01g00661 368 Pfam Sodium/calcium exchanger protein 94 253 IPR004837 GO:0016021|GO:0055085
Cma01g00661 368 Gene3D - 125 266 IPR044880 -
Cma01g00661 368 PANTHER VACUOLAR CATION/PROTON EXCHANGER 334 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00661 Cma-Chr1:3455404 Cma03g00349 Cma-Chr3:4186538 1.74E-100 dispersed
Cma01g00661 Cma-Chr1:3455404 Cma06g00231 Cma-Chr6:1173067 2.83E-107 wgd
Cma01g00661 Cma-Chr1:3455404 Cma07g01054 Cma-Chr7:5607832 9.56E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00661 K07300 - csv:105436053 440.654