Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00677 ATGTCCGTCTCCGTCGCCGTTTCGAATTCGCCGGGGTTTTCCCCTTCGTCCTCGATGTTCTGCAACAAGGCGGCGATCATTTCTCCGGCGCCGGAAGCTCTAACACTGACGTTGGCTCATTTGAAGTCGTCTCAGCCTTCGTCGTCTTGCTCGTCTTCGCCGTCTTCCCCTTCTTCCCCTTTTTGGATTAGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCCGTGGCGCCAATGGCTTCCACTTCTTCTTCTACGTCTCCGACGTCGTCCAACGCGATCACGAAGAGGAAGAGACCAGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGAGCTCTGGTGTCGCCGTCGTCGTCGTTCAGGGACGTGATGGAGGCCGAGAGAGATGGGTATTCTGTTTATTGCAAGAGAGGGAGGCGGAGAATCTCCATGGAAGATCGGTATTCAGCCGCTGTTGATCTTCGTGGCGATTCTAAAGAGGCATTTTTTGGTGTATTTGATGGACATGGCGGTGCAAAGGCGGCAGAATTTGCAGCAAATAACTTAAAGAAGAACATAATGAACGAACTTGAAAGAATAACTGACTATGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAAGATCAACGCGGTGGGTCATGTTGTGTAACAGCCCTGATCAAAAAAGGCAACCTTATTATCTCCAACGCTGGTGACTGCCGTGCCGTTCTTAGCAGCGAGGGCGTCGCAGAAGCCATCACCTCCGACCACCGTCCGTCACGAGAAGACGAAAGACAGCGAATCGAGTCGAGGGGTGGATATGTTGATCTCTGCAATGGCGTTTGGAGAGTCCAAGGATCTCTAGCTGTAACAAGAGGAATTGGGGATGCTCACTTGAAACAATGGGTGATAGCAGAGCCAGAGACAACGTCGATACGGATCGAAGCTCGACACGAGTTCTTGATCTTGGCCTCCGACGGGTTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATCGTGCGCCCATCGTGTGTGGGGATTGAGAAGGCAACGCCATTGGAGGCCTGTAAAAAGCTCGTGGAGCTATCACTTTCAAGAGGCTCAGTAGATGATATTAGTGTAGTTCTTATTCAATTGCCTAACTTCATTTGA 1158 50.95 MSVSVAVSNSPGFSPSSSMFCNKAAIISPAPEALTLTLAHLKSSQPSSSCSSSPSSPSSPFWIRFPKPPSGLSAVAPMASTSSSTSPTSSNAITKRKRPARLDIPLTPLSFGALVSPSSSFRDVMEAERDGYSVYCKRGRRRISMEDRYSAAVDLRGDSKEAFFGVFDGHGGAKAAEFAANNLKKNIMNELERITDYEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLIISNAGDCRAVLSSEGVAEAITSDHRPSREDERQRIESRGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETTSIRIEARHEFLILASDGLWETVSNQEAVDIVRPSCVGIEKATPLEACKKLVELSLSRGSVDDISVVLIQLPNFI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3539633 3542085 + CmaCh01G006770.1 Cma01g00677 286370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00677 385 MobiDBLite consensus disorder prediction 75 95 - -
Cma01g00677 385 Pfam Protein phosphatase 2C 137 374 IPR001932 -
Cma01g00677 385 Gene3D - 132 384 IPR036457 -
Cma01g00677 385 ProSiteProfiles PPM-type phosphatase domain profile. 131 381 IPR001932 -
Cma01g00677 385 SMART PP2C_4 122 379 IPR001932 -
Cma01g00677 385 CDD PP2Cc 131 381 IPR001932 -
Cma01g00677 385 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169
Cma01g00677 385 Coils Coil 180 200 - -
Cma01g00677 385 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 384 - -
Cma01g00677 385 MobiDBLite consensus disorder prediction 73 99 - -
Cma01g00677 385 SMART PP2C_SIG_2 140 381 IPR001932 -
Cma01g00677 385 PANTHER PROTEIN PHOSPHATASE 2C 3 384 IPR015655 GO:0004722|GO:0006470
Cma01g00677 385 SUPERFAMILY PP2C-like 131 383 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00677 Cma13g00056 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00677 Cma-Chr1:3539633 Cma04g00146 Cma-Chr4:698808 4.30E-121 dispersed
Cma01g00677 Cma-Chr1:3539633 Cma13g00056 Cma-Chr13:481976 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00677 K17506 - csv:101207841 612.068