Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00678 ATGGCGAATACGACGAAGCTTTCCTGGACAAGAAGTAATTGTGTCATCGGAAAGGGTTCCTTTGGAACTGTGACCGTCGGGATTCGAAATTCGGACGGTCGGATTTTTGCGGTGAAGTCTGTCGGACAGAGTGTTGGATTCCGGCGGCAGATTGAGTGTTTAGAGAAAGAAATTCGGATTCTTAGATCGTTGAATTCGCCGTACGTGGTGGGGTTTCTTGGTGATGATGTTTCCGATGAGACGCCGATGACGTCGCTTCGGAATTTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGATGATCCAATCGGTACCGGCGACGAGATGGTTCTACGGGCGAGGACACGGTGTATTGTTTCCGCTTTGAGTTATGTTCATTCCAAAGGAATCGTTCATTGTGATGTTAAAGGGCGGAATGTTTTGATTGGATTGAATCCAAGTTTTGTTAAATTGGCTGACTTCGGCTCTGCAATTGAAATCTCCGGAGGCGACGGAGGCGACGGCGACACGTGTCGATGTTCGGTGGCGCCACGAGGGAGTCCGCTTTGGATGGCGCCGGAAGTGGTTCGAGGGGAATATCAGGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGCTTTTCCGATGACTTACCGGAGTTTCCGACACGGTTGTCGGGACTCGGACTGGATTTTCTCCGGAAGTGTCTTGTAAGAGATCCGAAAGAACGGTGGAGCTGTGATCGGCTACTGCAGCATCCATTTTTAGCGGCGGTGGCAGCCTCGCCGGAAATCGCCATCGAGAATTCCCCCCGGTGCGTGCTCGACTGGGTCAACGCCGATTTCGACGATAACGAAGATGAAGAAATCCCCTTCTCCGGCGAAACCTCCGGCGCCGGAAGCCAGGAAAGCGAGATCTCCGGCAAGTGCAGAATAGGGAAATTGAGTACGAGTGAATGGCCGAACTGGGAATCGGACGGTTGGTCGTCGGCGAGAAGGTTCACAGCGGCGCCGGTAACCTGTGAAGAAGGAGTAGGGGTAAATTGGGAATATGAGAATTCGAGAGGGGTAGAAATGGAAATGGAGGGAACAAGTTCAGAATATTCGGAGTTCGTAAAGCACAGTGACGAAGAATTGGGAGCCGCCCTTTCAAATCCTAGCGGTCTGGAGACTCCGGAGCGGCCACGTAATAATTGCGGCAGCGGCAGCGGCAGCGGCGGCGGTGGCGGTGGATTAAACTCGCAGCGAGAAGATGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCTCAAGTCGCCCCAATCGTCAAGTTGGAAGCGGTAGCCGTCACAACTGGTGAAGAAAACGAGGACGTTATTCTTGACCTAAAGTCCAAACTCTACCGATTTGATAAAGAAGGAAACCAATGGAAGGAGAGAGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGGCAGTCTAAGACCCTCAAGATCTGCGCTAACCATCTTGTTCTTCCATCAATGTCGGTTCAAGAACACGCTGGTAATGATAAGTCTTGTGTGTGGCATGCGCCTGACTATGCGGATGGTGAATTGAAAGATGAGCTGTTTTGCATCAGATTCCCATCTATTGAGAACTGCAAAACCTTCATGGAGACATTCCAAGAAGTCGCGGAGTCCCAAACGAAGAAAGAGGAGAATGAAGATGCATCTGCAGCAGCTGATCTACTTGAAAAATTAAAGGTTGAAGAAAAAAAGGAGGAAGGTGAAGATAAAGCCGAAGACAAAGCTGAAGATAAAGCTGCAGAGAAAGAGTAA 1881 50.77 MANTTKLSWTRSNCVIGKGSFGTVTVGIRNSDGRIFAVKSVGQSVGFRRQIECLEKEIRILRSLNSPYVVGFLGDDVSDETPMTSLRNLHMEYLPGGTVADDPIGTGDEMVLRARTRCIVSALSYVHSKGIVHCDVKGRNVLIGLNPSFVKLADFGSAIEISGGDGGDGDTCRCSVAPRGSPLWMAPEVVRGEYQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSGLGLDFLRKCLVRDPKERWSCDRLLQHPFLAAVAASPEIAIENSPRCVLDWVNADFDDNEDEEIPFSGETSGAGSQESEISGKCRIGKLSTSEWPNWESDGWSSARRFTAAPVTCEEGVGVNWEYENSRGVEMEMEGTSSEYSEFVKHSDEELGAALSNPSGLETPERPRNNCGSGSGSGGGGGGLNSQREDEEAPAAEDEDTGAQVAPIVKLEAVAVTTGEENEDVILDLKSKLYRFDKEGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHAPDYADGELKDELFCIRFPSIENCKTFMETFQEVAESQTKKEENEDASAAADLLEKLKVEEKKEEGEDKAEDKAEDKAAEKE 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3550562 3556863 + CmaCh01G006780.1 Cma01g00678 286371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00678 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Cma01g00678 626 SMART serkin_6 10 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00678 626 Gene3D Transferase(Phosphotransferase) domain 1 6 306 - -
Cma01g00678 626 MobiDBLite consensus disorder prediction 399 449 - -
Cma01g00678 626 ProSiteProfiles Ran binding domain type 1 profile. 449 584 IPR000156 GO:0046907
Cma01g00678 626 MobiDBLite consensus disorder prediction 580 626 - -
Cma01g00678 626 Pfam Protein kinase domain 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00678 626 Pfam RanBP1 domain 461 578 IPR000156 GO:0046907
Cma01g00678 626 SUPERFAMILY PH domain-like 448 585 - -
Cma01g00678 626 MobiDBLite consensus disorder prediction 306 325 - -
Cma01g00678 626 CDD RanBD_RanBP1 447 580 IPR045256 GO:0006913
Cma01g00678 626 SMART ranbd_3 450 578 IPR000156 GO:0046907
Cma01g00678 626 ProSiteProfiles Protein kinase domain profile. 10 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00678 626 MobiDBLite consensus disorder prediction 407 427 - -
Cma01g00678 626 Coils Coil 584 608 - -
Cma01g00678 626 CDD STKc_MAPKKK 8 273 - -
Cma01g00678 626 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 363 - -
Cma01g00678 626 Gene3D - 433 599 IPR011993 -
Cma01g00678 626 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Cma01g00678 626 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 4 363 - -
Cma01g00678 626 SUPERFAMILY Protein kinase-like (PK-like) 14 285 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00678 Cma-Chr1:3550562 Cma13g00055 Cma-Chr13:477964 2.45E-105 dispersed
Cma17g00818 Cma-Chr17:6434061 Cma01g00678 Cma-Chr1:3550562 6.08E-07 dispersed
Cma01g00678 Cma-Chr1:3550562 Cma01g00679 Cma-Chr1:3557273 1.54E-105 tandem
Cma01g00678 Cma-Chr1:3550562 Cma13g00052 Cma-Chr13:471695 1.14E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68261 PF00069 Pkinase 8.10E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00678 - - cmo:103497226 598.971