Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00711 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCCCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACTTCTTACTCCGACCTTCTCGCCGCCGGCAGCAACGATCTTCCATCCTCCGCCGCTGCCCACGGAGCTCACCGAGGCACTGGAACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTGCCTCTGTCGCCACCTACTCTGTTTCCTTCTCCCCTGTTCTCCATTCCTCCTGGTTTGAGCCCCACCGAGCTTCTTGATTCGCCGGTTTTCCTCAGTGGTTCTTATGTTCTGCCGTCGCCGACCACTGGGAGTTTCCCGTCGCAGTCGTTGAATTGGAAGAACAATTCTGGGTGTAATCAACAGAGCATCAAAGAAGAGAACAAATTCTTGTCGGAATTCTCATTTCTAAATCAATCGTCTCAGCCACCGACATCTTTTCAGCCAGCTCCGACGACTCAAGGAAAGAAACAGGACGGATCGATGCAGAGCTTCTCACCGGAATATGGGATTGTTCAAAACCAGAGCCAGAACAACGCCGGCAGAGATTACCCTCAACAATCTCAGACGGTGAATCGGAGATCCGACGACGGTTACAACTGGAGAAAATACGGCCAAAAACAGGTCAAGGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCGGCCATAACCACCCGAAGCCACAGTCAACGAGGAAGTCATCGTTGTCGTCCGCCGTGTCGGCGTCAAATCCAGCCGCCAACGATATGGCGGAGCAGTCATTCACAACCCAAGGAAGCGGTCAAGTCGACGGCGTTGCAACGCCGGAGAATTCATTGATCTCGGTCGGCGACGATGACTTCGATCGGAGCTCTCAGAGGAGCAAATCTGCAGGAGACGATAACGACGAGGACGAACCAGAGGCCAAGAGGTGGAGAAGGGATGGTGATAACAGTGAAGGGATTTCAGCTGCAGGTAACCGGACCGTGAGAGAGCCGAGAGTCGTTGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGCCAAAAAGTGGTTAAGGGAAACCCAAATCCAAGGAGTTATTACAAATGTACAAACCCGGGATGTCCAGTAAGAAAGCATGTAGAGAGAGCCTCACATGATCTACGAGCAGTGATCACAACCTACGAAGGCAAACACAACCACGAAGTCCCACCGGCACGCGGCAGCGGAAGCCATTCCCTCAGCCGTCCATTTCCCAGCAATGACCCGTCGGCCACCGCAATCCGCCCATTGGCGGTGACCCATCAAGCAAACAACGGCGCTGACAACAACGACGACAACCTTCTTCATGGTATGAGGCTACAACAATCTTCGGACAACCAAACACCATTCACACTAGAAATGGTGCAAACTCCAAATGGATTTTCATTCCCAGAATTTTGGAACTCCATTGGGATGGGGTCCTACATGAATCCAACACAATCCAACGACAATACGTTCATTAGAGCAAAAGAAGAGCCGAGAGATCACGATATGTTCATCCAATCTCACCTATGTTGA 1647 51.0 MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLAAGSNDLPSSAAAHGAHRGTGTGVPKFKSLPPPSLPLSPPTLFPSPLFSIPPGLSPTELLDSPVFLSGSYVLPSPTTGSFPSQSLNWKNNSGCNQQSIKEENKFLSEFSFLNQSSQPPTSFQPAPTTQGKKQDGSMQSFSPEYGIVQNQSQNNAGRDYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGGHNHPKPQSTRKSSLSSAVSASNPAANDMAEQSFTTQGSGQVDGVATPENSLISVGDDDFDRSSQRSKSAGDDNDEDEPEAKRWRRDGDNSEGISAAGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHEVPPARGSGSHSLSRPFPSNDPSATAIRPLAVTHQANNGADNNDDNLLHGMRLQQSSDNQTPFTLEMVQTPNGFSFPEFWNSIGMGSYMNPTQSNDNTFIRAKEEPRDHDMFIQSHLC 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3726739 3729055 - CmaCh01G007110.1 Cma01g00711 286404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00711 548 SUPERFAMILY WRKY DNA-binding domain 365 433 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 SMART WRKY_cls 373 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 MobiDBLite consensus disorder prediction 262 303 - -
Cma01g00711 548 MobiDBLite consensus disorder prediction 146 225 - -
Cma01g00711 548 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 520 IPR044810 GO:0003700
Cma01g00711 548 MobiDBLite consensus disorder prediction 253 357 - -
Cma01g00711 548 MobiDBLite consensus disorder prediction 146 203 - -
Cma01g00711 548 SUPERFAMILY WRKY DNA-binding domain 202 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 47 520 - -
Cma01g00711 548 MobiDBLite consensus disorder prediction 310 345 - -
Cma01g00711 548 MobiDBLite consensus disorder prediction 424 455 - -
Cma01g00711 548 ProSiteProfiles WRKY domain profile. 368 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 Pfam WRKY DNA -binding domain 374 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 Gene3D WRKY domain 360 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 Gene3D WRKY domain 190 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00711 548 MobiDBLite consensus disorder prediction 41 67 - -
Cma01g00711 548 ProSiteProfiles WRKY domain profile. 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00711 Cma02g00709 CCT
Cma01g00711 Cma02g00709 ECH
Cma01g00711 Cma13g00029 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00711 Cma-Chr1:3726739 Cma02g00709 Cma-Chr2:4293272 6.26E-115 dispersed
Cma18g01123 Cma-Chr18:9120796 Cma01g00711 Cma-Chr1:3726739 1.71E-79 dispersed
Cma14g00032 Cma-Chr14:149735 Cma01g00711 Cma-Chr1:3726739 3.27E-116 transposed
Cma01g00711 Cma-Chr1:3726739 Cma13g00029 Cma-Chr13:373134 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34276 PF03106 WRKY 3.30E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00711 K13424 - csv:101207158 809.675