Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00720 ATGGACTCGATGTGGAGAAATTTGTGGTGTCTTTTTGTGTTTGTTTCGTTGATACCTTTCAACTTTGGCAGTTTATCTGCAAACTTTTACGAGAGCTCATGTCCCAAACTACTCTCCACCGTACGACGTGAAGTCGTGAAAGCTGTGGCCAAGGAGTATCGAATGGGGGCTTCCTTGCTTCGTCTTCATTTTCACGACTGCTTTGTTAATGGATGTGATGCATCAGTGCTGCTAGACGACACGTCGAACTTCACCGGAGAAAAGACAGCAATCCCAAATAAAGATTCGTTGAGAGGTTTTGAAGTGATCGACGGGATAAAAACGCTGGTGGAGGCGAGCTGCCCTTCAGTGGTTTCATGTGCTGATATTCTGTCCATTGCAGCCAGGGACTCAGTGGTTGCTCTCGGTGGGCCGTCGTGGGTGGTGGCGCTAGGGAGGAGAGACGCCACCACCGCCAGCTTTGATCGAGCAAACAATGACCTTCCTTCTCCCTTCCTCGACCTCCCTGATCTCGTCTCCGCCTTCTCCAACAAAGGCTTTGATACCAAAGAATTAGTTGCTCTTTCAGGATCACATACAATAGGGCAAGCGAGGTGCTCGATGTTCCGAGTAAGGGCTCATAACGAAACGACTATTGATTCGGAGTTCGCAGCTTCTTTAAGATCAAATTGCCCTTTCTCCGGTGACGACGACAAGCTTTCGTCTTTAGATGTCCGCACGCCTTCCTCCTTCGACACGGCTTATTTCAAGAATTTGATACAAAACAAAGGTCTTCTTCATTCCGATCAAGCCCTCTTCAGCAATGGGTCCGCCGACTCTCATGTCACCTCTTACTCCTCCAACCCCTCTGCTTTCTTCACCGACTTCGCCGCCGCCATGGTTAAGATGTCTAATCTCAGCCCGCTCACTGGAACTGACGGCGAGATTCGTTCCGACTGCCGGAAGATCAATGCCTGA 957 49.63 MDSMWRNLWCLFVFVSLIPFNFGSLSANFYESSCPKLLSTVRREVVKAVAKEYRMGASLLRLHFHDCFVNGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDGIKTLVEASCPSVVSCADILSIAARDSVVALGGPSWVVALGRRDATTASFDRANNDLPSPFLDLPDLVSAFSNKGFDTKELVALSGSHTIGQARCSMFRVRAHNETTIDSEFAASLRSNCPFSGDDDKLSSLDVRTPSSFDTAYFKNLIQNKGLLHSDQALFSNGSADSHVTSYSSNPSAFFTDFAAAMVKMSNLSPLTGTDGEIRSDCRKINA 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3790072 3792138 + CmaCh01G007200.1 Cma01g00720 286413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00720 318 SUPERFAMILY Heme-dependent peroxidases 25 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 Gene3D - 28 317 - -
Cma01g00720 318 ProSiteProfiles Plant heme peroxidase family profile. 24 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 CDD secretory_peroxidase 25 316 IPR033905 GO:0004601|GO:0042744
Cma01g00720 318 PANTHER PEROXIDASE 19 317 - -
Cma01g00720 318 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 Pfam Peroxidase 41 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g00720 318 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cma01g00720 318 Gene3D Peroxidase, domain 2 162 296 - -
Cma01g00720 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Cma01g00720 318 PANTHER PEROXIDASE 72-RELATED 19 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00720 Cma20g00314 CCT
Cma01g00720 Cma20g00314 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00720 Cma-Chr1:3790072 Cma20g00314 Cma-Chr20:1557538 5.68E-123 dispersed
Cma03g00990 Cma-Chr3:6983239 Cma01g00720 Cma-Chr1:3790072 1.48E-104 dispersed
Cma01g00720 Cma-Chr1:3790072 Cma01g00721 Cma-Chr1:3796278 5.44E-117 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00720 K00430 - csv:101221157 522.316